Discussion:
Bug#969494: r-cran-mice: autopkgtest regression: there is no package called ‘broom.mixed’
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Paul Gevers
2020-09-03 19:10:02 UTC
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Source: r-cran-mice
Version: 3.10.0-1
X-Debbugs-CC: debian-***@lists.debian.org
Severity: serious
User: debian-***@lists.debian.org
Usertags: regression

Dear maintainer(s),

With a recent upload of r-cran-mice the autopkgtest of r-cran-mice fails
in testing when that autopkgtest is run with the binary packages of
r-cran-mice from unstable. It passes when run with only packages from
testing. In tabular form:

pass fail
r-cran-mice from testing 3.10.0-1
versioned deps [0] from testing from unstable
all others from testing from testing

I copied some of the output at the bottom of this report.

Currently this regression is blocking the migration to testing [1]. Can
you please investigate the situation and fix it?

More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation

Paul

[0] You can see what packages were added from the second line of the log
file quoted below. The migration software adds source package from
unstable to the list if they are needed to install packages from
r-cran-mice/3.10.0-1. I.e. due to versioned dependencies or
breaks/conflicts.
[1] https://qa.debian.org/excuses.php?package=r-cran-mice

https://ci.debian.net/data/autopkgtest/testing/amd64/r/r-cran-mice/6894306/log.gz

autopkgtest [02:08:37]: test run-unit-test: [-----------------------
BEGIN TEST testthat.R

R version 4.0.2 (2020-06-22) -- "Taking Off Again"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
library(testthat)
library(mice)
Attaching package: ‘mice’

The following objects are masked from ‘package:base’:

cbind, rbind
test_check("mice")
── 1. Error: (unknown) (@test-D3.R#48)
────────────────────────────────────────
there is no package called ‘broom.mixed’
Backtrace:
1. base::library(broom.mixed, quietly = TRUE)

══ testthat results
═══════════════════════════════════════════════════════════
[ OK: 299 | SKIPPED: 1 | WARNINGS: 0 | FAILED: 1 ]
1. Error: (unknown) (@test-D3.R#48)

Error: testthat unit tests failed
Execution halted
autopkgtest [02:09:14]: test run-unit-test: -----------------------]
a
Debian Bug Tracking System
2020-09-03 20:20:01 UTC
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tags -1 pending
Bug #969494 [src:r-cran-mice] r-cran-mice: autopkgtest regression: there is no package called ‘broom.mixed’
Added tag(s) pending.
--
969494: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=969494
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Andreas Tille
2020-09-03 20:20:01 UTC
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Control: tags -1 pending

Hi Paul,

I just realised this in the new version of r-cran-mice and just pushed
the missing dependency to new:

https://ftp-master.debian.org/new/r-cran-broom.mixed_0.2.6-1.html

Hope it will be processed soon to fix this bug.

Thanks for all your work

Andreas.
--
http://fam-tille.de
Debian Bug Tracking System
2020-10-15 10:10:03 UTC
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block -1 by 969426
Bug #969494 [src:r-cran-mice] r-cran-mice: autopkgtest regression: there is no package called ‘broom.mixed’
969494 was not blocked by any bugs.
969494 was blocking: 970330 971235
Added blocking bug(s) of 969494: 969426
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969494: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=969494
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Debian Bug Tracking System
2020-10-17 21:00:02 UTC
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Your message dated Sat, 17 Oct 2020 20:48:17 +0000
with message-id <E1kTt7h-000J5n-***@fasolo.debian.org>
and subject line Bug#969494: fixed in r-cran-mice 3.11.0-1
has caused the Debian Bug report #969494,
regarding r-cran-mice: autopkgtest regression: there is no package called ‘broom.mixed’
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
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immediately.)
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969494: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=969494
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