Lucas Nussbaum
2024-06-16 14:00:18 UTC
Source: kissplice
Version: 2.6.2-3
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: ***@debian.org
Usertags: ftbfs-20240615 ftbfs-trixie
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
http://qa-logs.debian.net/2024/06/15/kissplice_2.6.2-3_unstable.log
All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20240615;users=***@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20240615&fusertaguser=***@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
Version: 2.6.2-3
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: ***@debian.org
Usertags: ftbfs-20240615 ftbfs-trixie
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -MD -MT modules/CMakeFiles/ks_run_modules.dir/run.cpp.o -MF CMakeFiles/ks_run_modules.dir/run.cpp.o.d -o CMakeFiles/ks_run_modules.dir/run.cpp.o -c /<<PKGBUILDDIR>>/modules/run.cpp
[ 12%] Generating user_guide.pdf
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/usr/bin/pdflatex -halt-on-error -interaction=nonstopmode -output-directory=/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/doc /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/doc/user_guide.tex
[ 13%] Building CXX object modules/CMakeFiles/ks_print_bcc.dir/PrintBcc.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -MD -MT modules/CMakeFiles/ks_print_bcc.dir/PrintBcc.cpp.o -MF CMakeFiles/ks_print_bcc.dir/PrintBcc.cpp.o.d -o CMakeFiles/ks_print_bcc.dir/PrintBcc.cpp.o -c /<<PKGBUILDDIR>>/modules/PrintBcc.cpp
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\T1/cmr/m/n/12 If you have ques-tions, please use pri-mar-ily the biostars fo-r
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/<<PKGBUILDDIR>>/thirdparty/kissreads/src/extension_algorithm.cpp:439:44: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
439 | for (ii=offset_seed; ii<offset_seed+nb_seeds; ii++) {
| ~~^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/modules/BubbleEnumeration.h:84:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
84 | fscanf(info_file, "%d \n",&bcc_size );
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/modules/BubbleEnumeration.h:85:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
85 | fscanf(info_file, "%d \n",&records_per_file );
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/modules/CGraph.h:235:68: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
235 | for (int i = 0; i < *required_sequence+*file_index-2 ; i++) fgets(buffer, 100 * MAX, contents_file_node);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/modules/CGraph.h:236:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
236 | fscanf(contents_file_node, "%d \n",&written_lines_before );
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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237 | fscanf(contents_file_node, "%d \n",&written_lines_for_record );
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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248 | for (int i = 0; i < written_lines_before ; i++) fgets(buffer, 100 * MAX, node_file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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64 | fgets(buffer, 100 * MAX, in_file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
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313 | for (int i = 0; i < *required_sequence+*file_index-2 ; i++) fgets(buffer, 100 * MAX, contents_file_edge);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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248 | for (int i = 0; i < written_lines_before ; i++) fgets(buffer, 100 * MAX, node_file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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313 | for (int i = 0; i < *required_sequence+*file_index-2 ; i++) fgets(buffer, 100 * MAX, contents_file_edge);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/modules/CGraph.h:314:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
314 | fscanf(contents_file_edge, "%d \n",&written_lines_before );
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/modules/CGraph.h:315:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
315 | fscanf(contents_file_edge, "%d \n",&written_lines_for_record );
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/modules/CGraph.h:322:56: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
322 | for (int i = 0; i < written_lines_before ; i++) fgets(buffer, 100 * MAX, edge_file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/modules/CGraph.h:277:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
277 | fgets(buffer, 100 * MAX, edge_file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 25%] Building CXX object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/libchash.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/c++ -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -I/<<PKGBUILDDIR>>/thirdparty/kissreads/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -fopenmp -MD -MT thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/libchash.cpp.o -MF CMakeFiles/ks_kissreadsSplice.dir/libchash.cpp.o.d -o CMakeFiles/ks_kissreadsSplice.dir/libchash.cpp.o -c /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:580:44: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘u_long’ {aka ‘long unsigned int’} [-Wsign-compare]
580 | for ( iter->posGroup++; iter->posGroup < SPARSE_GROUPS(iter->cBuckets);
| ^
mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input tcrm1200
This is METAFONT, Version 2.71828182 (TeX Live 2025/dev/Debian) (preloaded base=mf)
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:193:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
193 | fread(&_ul, sizeof(_ul), 1, (fp)); \
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:220:7: note: in expansion of macro ‘READ_UL’
220 | READ_UL((ht)->fpData, cchData); \
| ^~~~~~~
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:1074:4: note: in expansion of macro ‘LOAD_AND_RETURN’
1074 | LOAD_AND_RETURN(ht, Find(ht, KEY_TRUNC(ht, key), NULL));
| ^~~~~~~~~~~~~~~
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf)
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/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:193:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
193 | fread(&_ul, sizeof(_ul), 1, (fp)); \
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:220:7: note: in expansion of macro ‘READ_UL’
220 | READ_UL((ht)->fpData, cchData); \
| ^~~~~~~
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:1079:4: note: in expansion of macro ‘LOAD_AND_RETURN’
1079 | LOAD_AND_RETURN(ht, ht->posLastFind);
| ^~~~~~~~~~~~~~~
Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txpseudo.mf
Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txaccent.mf
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:193:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
193 | fread(&_ul, sizeof(_ul), 1, (fp)); \
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:220:7: note: in expansion of macro ‘READ_UL’
220 | READ_UL((ht)->fpData, cchData); \
| ^~~~~~~
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:1142:15: note: in expansion of macro ‘LOAD_AND_RETURN’
1142 | LOAD_AND_RETURN(ht, retval);
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:193:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
193 | fread(&_ul, sizeof(_ul), 1, (fp)); \
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:220:7: note: in expansion of macro ‘READ_UL’
220 | READ_UL((ht)->fpData, cchData); \
| ^~~~~~~
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:1154:15: note: in expansion of macro ‘LOAD_AND_RETURN’
1154 | LOAD_AND_RETURN(ht, retval);
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:1263:9: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
1263 | fread(szMagicKey, 1, 4, fp);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:193:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
193 | fread(&_ul, sizeof(_ul), 1, (fp)); \
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:1272:4: note: in expansion of macro ‘READ_UL’
1272 | READ_UL(fp, ht->cchKey);
| ^~~~~~~
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:193:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
193 | fread(&_ul, sizeof(_ul), 1, (fp)); \
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:1273:4: note: in expansion of macro ‘READ_UL’
1273 | READ_UL(fp, ht->cItems);
| ^~~~~~~
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:193:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
193 | fread(&_ul, sizeof(_ul), 1, (fp)); \
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:1274:4: note: in expansion of macro ‘READ_UL’
1274 | READ_UL(fp, ht->cDeletedItems);
| ^~~~~~~
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:193:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
193 | fread(&_ul, sizeof(_ul), 1, (fp)); \
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:1277:4: note: in expansion of macro ‘READ_UL’
1277 | READ_UL(fp, cchKey);
| ^~~~~~~
[6]/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:1279:9: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
1279 | fread(rgchKeys, 1, cchKey, fp);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:193:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
193 | fread(&_ul, sizeof(_ul), 1, (fp)); \
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:1284:7: note: in expansion of macro ‘READ_UL’
1284 | READ_UL(fp, bck->data); /* all we need if dataRead is NULL */
| ^~~~~~~
[7] [8] [9] [10] [11] [12] [27] [29])
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:193:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
193 | fread(&_ul, sizeof(_ul), 1, (fp)); \
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:620:4: note: in expansion of macro ‘READ_UL’
620 | READ_UL(fp, cBuckets); /* actually, cBuckets is stored */
| ^~~~~~~
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:193:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
193 | fread(&_ul, sizeof(_ul), 1, (fp)); \
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:625:10: note: in expansion of macro ‘READ_UL’
625 | READ_UL(fp, (*pbinSparse)[i].bmOccupied[j]);
| ^~~~~~~
Ok [100] [109] [98] [99] [108])
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doc/tcrm1200.600gf (128 characters, 28032 bytes).
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gnu/doc/tcrm1200.log.
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LaTeX Warning: There were undefined references.
LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.
)
(see the transcript file for additional information)
!pdfTeX error: /usr/bin/pdflatex (file tcrm1200): Font tcrm1200 at 600 not foun
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\T1/cmr/m/n/12 If you have ques-tions, please use pri-mar-ily the biostars fo-r
um: $\T1/cmtt/m/n/12 www . biostars . org / t / kissplice/$
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\T1/cmr/m/n/12 To do so, please sub-scribe at : $\T1/cmtt/m/n/12 http : / / lis
ts . gforge . inria . fr / cgi-[]bin / mailman / listinfo /
[2]
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[]\T1/cmr/m/n/12 The \T1/cmtt/m/n/12 sample_example \T1/cmr/m/n/12 di-rec-tory
con-tains four files \T1/cmtt/m/n/12 mock1.fq\T1/cmr/m/n/12 , \T1/cmtt/m/n/12 m
ock2.fq\T1/cmr/m/n/12 , \T1/cmtt/m/n/12 virus1.fq\T1/cmr/m/n/12 , \T1/cmtt/m/n/
12 virus2.fq
[3]
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ock2_virus1_virus2_k41_coherents_type_1.fa\T1/cmr/m/n/12 ,
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LaTeX Warning: Reference `fig:extype1_C2' on page 4 undefined on input line 212
.
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/extension_algorithm.cpp:439:44: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
439 | for (ii=offset_seed; ii<offset_seed+nb_seeds; ii++) {
| ~~^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/modules/BubbleEnumeration.h:84:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
84 | fscanf(info_file, "%d \n",&bcc_size );
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/modules/BubbleEnumeration.h:85:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
85 | fscanf(info_file, "%d \n",&records_per_file );
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/modules/CGraph.h:235:68: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
235 | for (int i = 0; i < *required_sequence+*file_index-2 ; i++) fgets(buffer, 100 * MAX, contents_file_node);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/modules/CGraph.h:236:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
236 | fscanf(contents_file_node, "%d \n",&written_lines_before );
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/modules/CGraph.h:237:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
237 | fscanf(contents_file_node, "%d \n",&written_lines_for_record );
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/modules/CGraph.h:248:58: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
248 | for (int i = 0; i < written_lines_before ; i++) fgets(buffer, 100 * MAX, node_file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/modules/PrintBcc.cpp:64:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
64 | fgets(buffer, 100 * MAX, in_file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/modules/CGraph.h:313:68: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
313 | for (int i = 0; i < *required_sequence+*file_index-2 ; i++) fgets(buffer, 100 * MAX, contents_file_edge);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/modules/CGraph.h:314:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
314 | fscanf(contents_file_edge, "%d \n",&written_lines_before );
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/modules/CGraph.h:315:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
315 | fscanf(contents_file_edge, "%d \n",&written_lines_for_record );
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/modules/CGraph.h:322:56: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
322 | for (int i = 0; i < written_lines_before ; i++) fgets(buffer, 100 * MAX, edge_file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/extension_algorithm.cpp:439:44: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare]
439 | for (ii=offset_seed; ii<offset_seed+nb_seeds; ii++) {
| ~~^~~~~~~~~~~~~~~~~~~~~
]
LaTeX Warning: Reference `fig:quantif' on page 5 undefined on input line 275.[5 <./MBTD1_C0.png[ 18%] Building CXX object modules/CMakeFiles/ks_print_bcc.dir/Utils.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -MD -MT modules/CMakeFiles/ks_print_bcc.dir/Utils.cpp.o -MF CMakeFiles/ks_print_bcc.dir/Utils.cpp.o.d -o CMakeFiles/ks_print_bcc.dir/Utils.cpp.o -c /<<PKGBUILDDIR>>/modules/Utils.cpp
] [6 <./quantifModel.png[ 20%] Building CXX object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/interface_libchash.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/c++ -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -I/<<PKGBUILDDIR>>/thirdparty/kissreads/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -fopenmp -MD -MT thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/interface_libchash.cpp.o -MF CMakeFiles/ks_kissreadsSplice.dir/interface_libchash.cpp.o.d -o CMakeFiles/ks_kissreadsSplice.dir/interface_libchash.cpp.o -c /<<PKGBUILDDIR>>/thirdparty/kissreads/src/interface_libchash.cpp]
Overfull \hbox (1.2115pt too wide) in paragraph at lines 329--330[]\T1/cmtt/m/n/12 graph_NameReadFile1_NameReadFile2_..._NameReadFileN_kXX.nodes
\T1/cmr/m/n/12 for the nodes
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[]\T1/cmtt/m/n/12 results_NameReadFile1_NameReadFile2_..._NameReadFileN_kXX_typ
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[]\T1/cmtt/m/n/12 results_NameReadFile1_NameReadFile2_..._NameReadFileN_kXX_typ
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[]\T1/cmtt/m/n/12 results_NameReadFile1_NameReadFile2_..._NameReadFileN_kXX_typ
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[7]
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[]\T1/cmtt/m/n/12 results_NameReadFile1_..._NameReadFileN_kXX_type_4 .fa\T1/cmr
/m/n/12 : all oth-ers, com-posed
Underfull \hbox (badness 1655) in paragraph at lines 351--352
[]\T1/cmr/m/n/12 Since the read co-herency step may take a long time, \T1/cmtt/
m/n/12 KisSplice \T1/cmr/m/n/12 pre-emp-tively
Underfull \hbox (badness 2393) in paragraph at lines 351--352
\T1/cmr/m/n/12 out-puts these six fasta files be-fore check-ing for read co-her
ency in the di-rec-tory
Underfull \hbox (badness 4752) in paragraph at lines 353--354
[]\T1/cmtt/m/n/12 KisSplice \T1/cmr/m/n/12 also cre-ates a sum-mary log file in
the re-sults di-rec-tory named
[8]
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[9]
Underfull \hbox (badness 10000) in paragraph at lines 424--426
[10]
(/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/doc/user_guide.au
x)
kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 tcrm1200
[ 22%] Building CXX object modules/CMakeFiles/ks_run_modules.dir/CycleCompression.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/modules && /usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -MD -MT modules/CMakeFiles/ks_run_modules.dir/CycleCompression.cpp.o -MF CMakeFiles/ks_run_modules.dir/CycleCompression.cpp.o.d -o CMakeFiles/ks_run_modules.dir/CycleCompression.cpp.o -c /<<PKGBUILDDIR>>/modules/CycleCompression.cpp
[ 24%] Building CXX object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/interface_libchash.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/c++ -DCLASSICAL_SPANNING -I/<<PKGBUILDDIR>>/thirdparty/kissreads/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -fopenmp -MD -MT thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSNPS.dir/interface_libchash.cpp.o -MF CMakeFiles/ks_kissreadsSNPS.dir/interface_libchash.cpp.o.d -o CMakeFiles/ks_kissreadsSNPS.dir/interface_libchash.cpp.o -c /<<PKGBUILDDIR>>/thirdparty/kissreads/src/interface_libchash.cpp
/<<PKGBUILDDIR>>/modules/BubbleEnumeration.h:84:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
84 | fscanf(info_file, "%d \n",&bcc_size );
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/modules/BubbleEnumeration.h:85:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
85 | fscanf(info_file, "%d \n",&records_per_file );
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/modules/CGraph.h:235:68: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
235 | for (int i = 0; i < *required_sequence+*file_index-2 ; i++) fgets(buffer, 100 * MAX, contents_file_node);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/modules/CGraph.h:236:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
236 | fscanf(contents_file_node, "%d \n",&written_lines_before );
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/modules/CGraph.h:237:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
237 | fscanf(contents_file_node, "%d \n",&written_lines_for_record );
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/modules/CGraph.h:248:58: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
248 | for (int i = 0; i < written_lines_before ; i++) fgets(buffer, 100 * MAX, node_file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/modules/CGraph.h:198:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
198 | fgets(buffer, 100 * MAX, node_file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/modules/CGraph.h:313:68: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
313 | for (int i = 0; i < *required_sequence+*file_index-2 ; i++) fgets(buffer, 100 * MAX, contents_file_edge);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/modules/CGraph.h:314:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
314 | fscanf(contents_file_edge, "%d \n",&written_lines_before );
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/modules/CGraph.h:315:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
315 | fscanf(contents_file_edge, "%d \n",&written_lines_for_record );
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/modules/CGraph.h:322:56: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
322 | for (int i = 0; i < written_lines_before ; i++) fgets(buffer, 100 * MAX, edge_file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/modules/CGraph.h:277:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
277 | fgets(buffer, 100 * MAX, edge_file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 25%] Building CXX object thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/libchash.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/thirdparty/kissreads/src && /usr/bin/c++ -DCLASSICAL_SPANNING -DINPUT_FROM_KISSPLICE -I/<<PKGBUILDDIR>>/thirdparty/kissreads/include -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -Wall -fopenmp -MD -MT thirdparty/kissreads/src/CMakeFiles/ks_kissreadsSplice.dir/libchash.cpp.o -MF CMakeFiles/ks_kissreadsSplice.dir/libchash.cpp.o.d -o CMakeFiles/ks_kissreadsSplice.dir/libchash.cpp.o -c /<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:580:44: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘u_long’ {aka ‘long unsigned int’} [-Wsign-compare]
580 | for ( iter->posGroup++; iter->posGroup < SPARSE_GROUPS(iter->cBuckets);
| ^
mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input tcrm1200
This is METAFONT, Version 2.71828182 (TeX Live 2025/dev/Debian) (preloaded base=mf)
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:193:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
193 | fread(&_ul, sizeof(_ul), 1, (fp)); \
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:220:7: note: in expansion of macro ‘READ_UL’
220 | READ_UL((ht)->fpData, cchData); \
| ^~~~~~~
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:1074:4: note: in expansion of macro ‘LOAD_AND_RETURN’
1074 | LOAD_AND_RETURN(ht, Find(ht, KEY_TRUNC(ht, key), NULL));
| ^~~~~~~~~~~~~~~
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf)
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tcrm.mf
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymb.mf
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:193:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
193 | fread(&_ul, sizeof(_ul), 1, (fp)); \
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:220:7: note: in expansion of macro ‘READ_UL’
220 | READ_UL((ht)->fpData, cchData); \
| ^~~~~~~
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:1079:4: note: in expansion of macro ‘LOAD_AND_RETURN’
1079 | LOAD_AND_RETURN(ht, ht->posLastFind);
| ^~~~~~~~~~~~~~~
Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txpseudo.mf
Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txaccent.mf
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:193:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
193 | fread(&_ul, sizeof(_ul), 1, (fp)); \
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:220:7: note: in expansion of macro ‘READ_UL’
220 | READ_UL((ht)->fpData, cchData); \
| ^~~~~~~
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:1142:15: note: in expansion of macro ‘LOAD_AND_RETURN’
1142 | LOAD_AND_RETURN(ht, retval);
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:193:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
193 | fread(&_ul, sizeof(_ul), 1, (fp)); \
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:220:7: note: in expansion of macro ‘READ_UL’
220 | READ_UL((ht)->fpData, cchData); \
| ^~~~~~~
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:1154:15: note: in expansion of macro ‘LOAD_AND_RETURN’
1154 | LOAD_AND_RETURN(ht, retval);
| ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:1263:9: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
1263 | fread(szMagicKey, 1, 4, fp);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:193:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
193 | fread(&_ul, sizeof(_ul), 1, (fp)); \
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:1272:4: note: in expansion of macro ‘READ_UL’
1272 | READ_UL(fp, ht->cchKey);
| ^~~~~~~
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:193:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
193 | fread(&_ul, sizeof(_ul), 1, (fp)); \
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:1273:4: note: in expansion of macro ‘READ_UL’
1273 | READ_UL(fp, ht->cItems);
| ^~~~~~~
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:193:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
193 | fread(&_ul, sizeof(_ul), 1, (fp)); \
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:1274:4: note: in expansion of macro ‘READ_UL’
1274 | READ_UL(fp, ht->cDeletedItems);
| ^~~~~~~
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:193:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
193 | fread(&_ul, sizeof(_ul), 1, (fp)); \
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:1277:4: note: in expansion of macro ‘READ_UL’
1277 | READ_UL(fp, cchKey);
| ^~~~~~~
[6]/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:1279:9: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
1279 | fread(rgchKeys, 1, cchKey, fp);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:193:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
193 | fread(&_ul, sizeof(_ul), 1, (fp)); \
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:1284:7: note: in expansion of macro ‘READ_UL’
1284 | READ_UL(fp, bck->data); /* all we need if dataRead is NULL */
| ^~~~~~~
[7] [8] [9] [10] [11] [12] [27] [29])
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:193:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
193 | fread(&_ul, sizeof(_ul), 1, (fp)); \
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:620:4: note: in expansion of macro ‘READ_UL’
620 | READ_UL(fp, cBuckets); /* actually, cBuckets is stored */
| ^~~~~~~
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:193:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
193 | fread(&_ul, sizeof(_ul), 1, (fp)); \
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/thirdparty/kissreads/src/libchash.cpp:625:10: note: in expansion of macro ‘READ_UL’
625 | READ_UL(fp, (*pbinSparse)[i].bmOccupied[j]);
| ^~~~~~~
Ok [100] [109] [98] [99] [108])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymbol.mf
Ok [13] [18] [21] [22] [23] [24] [25] [26] [28] [31] [32] [36] [39] [44]
[45] [46] [42] [47] [60] [61] [62] [77] [79] [87] [110] [91] [93] [94] [95]
[96] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137]
[138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149]
[150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161]
[162] [163] [164] [165] [166] [167] [168] [169] [171] [172] [173] [174]
[175] [177] [176] [180] [181] [182] [183] [184] [187] [191] [214] [246])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txromod.mf
Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrsuper.mf
Ok [185] [178] [179] [170] [186])
(/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrfract.mf
Ok [188] [189] [190]) ) ) )
(some charht values had to be adjusted by as much as 0.06665pt)
Font metrics written on /<<PKGBUILDDIR>>/obj-x86_64-linu
x-gnu/doc/tcrm1200.tfm.
Output written on /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/
doc/tcrm1200.600gf (128 characters, 28032 bytes).
Transcript written on /<<PKGBUILDDIR>>/obj-x86_64-linux-
gnu/doc/tcrm1200.log.
mktexpk: `mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input tcrm1200' failed to make tcrm1200.600pk.
kpathsea: Appending font creation commands to /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/doc/missfont.log.
LaTeX Warning: There were undefined references.
LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.
)
(see the transcript file for additional information)
!pdfTeX error: /usr/bin/pdflatex (file tcrm1200): Font tcrm1200 at 600 not foun
d
==> Fatal error occurred, no output PDF file produced!
make[3]: *** [doc/CMakeFiles/doc.dir/build.make:78: doc/user_guide.pdf] Error 1
http://qa-logs.debian.net/2024/06/15/kissplice_2.6.2-3_unstable.log
All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20240615;users=***@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20240615&fusertaguser=***@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.