Lucas Nussbaum
2025-01-08 19:50:08 UTC
Reply
PermalinkVersion: 1.1.1+ds-3
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: ***@debian.org
Usertags: ftbfs-20250107 ftbfs-trixie
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
make[1]: Entering directory '/build/reproducible-path/bmtk-1.1.1+ds'
dh_auto_build
I: pybuild base:311: /usr/bin/python3.12 setup.py build
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require'
warnings.warn(msg)
running build
running build_py
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk
copying bmtk/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/analyzer
copying bmtk/analyzer/spikes_analyzer.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/analyzer
copying bmtk/analyzer/firing_rates.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/analyzer
copying bmtk/analyzer/utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/analyzer
copying bmtk/analyzer/ecp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/analyzer
copying bmtk/analyzer/edges.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/analyzer
copying bmtk/analyzer/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/analyzer
copying bmtk/analyzer/compartment.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/analyzer
copying bmtk/analyzer/spike_trains.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/analyzer
copying bmtk/analyzer/io_tools.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/analyzer
copying bmtk/analyzer/cell_vars.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/analyzer
copying bmtk/analyzer/spikes_loader.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/analyzer
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils
copying bmtk/utils/sim_setup.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils
copying bmtk/utils/hdf5_helper.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils
copying bmtk/utils/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils
copying bmtk/utils/lazy_property.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder
copying bmtk/builder/node_set.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder
copying bmtk/builder/builder_utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder
copying bmtk/builder/id_generator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder
copying bmtk/builder/network_builder.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder
copying bmtk/builder/edge.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder
copying bmtk/builder/networks.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder
copying bmtk/builder/index_builders.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder
copying bmtk/builder/node.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder
copying bmtk/builder/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder
copying bmtk/builder/connection_map.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder
copying bmtk/builder/iterator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder
copying bmtk/builder/node_pool.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder
copying bmtk/builder/connector.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder
copying bmtk/builder/functor_cache.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator
copying bmtk/simulator/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata
copying bmtk/utils/sonata/file.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata
copying bmtk/utils/sonata/utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata
copying bmtk/utils/sonata/edge.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata
copying bmtk/utils/sonata/population.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata
copying bmtk/utils/sonata/file_root.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata
copying bmtk/utils/sonata/column_property.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata
copying bmtk/utils/sonata/node.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata
copying bmtk/utils/sonata/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata
copying bmtk/utils/sonata/edge_stats.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata
copying bmtk/utils/sonata/types_table.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata
copying bmtk/utils/sonata/group.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/compile_mechanisms
copying bmtk/utils/compile_mechanisms/compile_mechanisms.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/compile_mechanisms
copying bmtk/utils/compile_mechanisms/__main__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/compile_mechanisms
copying bmtk/utils/compile_mechanisms/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/compile_mechanisms
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/cell_types_db
copying bmtk/utils/cell_types_db/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/cell_types_db
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports
copying bmtk/utils/reports/current_writer.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports
copying bmtk/utils/reports/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/create_environment
copying bmtk/utils/create_environment/create_environment.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/create_environment
copying bmtk/utils/create_environment/env_builder.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/create_environment
copying bmtk/utils/create_environment/__main__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/create_environment
copying bmtk/utils/create_environment/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/create_environment
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/io
copying bmtk/utils/io/firing_rates.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/io
copying bmtk/utils/io/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/io
copying bmtk/utils/io/spike_trains.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/io
copying bmtk/utils/io/ioutils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/io
copying bmtk/utils/io/cell_vars.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/io
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata/config
copying bmtk/utils/sonata/config/sonata_config.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata/config
copying bmtk/utils/sonata/config/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata/config
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/spike_trains
copying bmtk/utils/reports/spike_trains/spikes_file_writers.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/spike_trains
copying bmtk/utils/reports/spike_trains/spike_train_readers.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/spike_trains
copying bmtk/utils/reports/spike_trains/core.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/spike_trains
copying bmtk/utils/reports/spike_trains/spike_trains_api.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/spike_trains
copying bmtk/utils/reports/spike_trains/stats.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/spike_trains
copying bmtk/utils/reports/spike_trains/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/spike_trains
copying bmtk/utils/reports/spike_trains/spike_trains.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/spike_trains
copying bmtk/utils/reports/spike_trains/plotting.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/spike_trains
copying bmtk/utils/reports/spike_trains/spike_train_buffer.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/spike_trains
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/compartment
copying bmtk/utils/reports/compartment/core.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/compartment
copying bmtk/utils/reports/compartment/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/compartment
copying bmtk/utils/reports/compartment/compartment_writer.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/compartment
copying bmtk/utils/reports/compartment/plotting.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/compartment
copying bmtk/utils/reports/compartment/compartment_report.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/compartment
copying bmtk/utils/reports/compartment/compartment_reader.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/compartment
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/network_adaptors
copying bmtk/builder/network_adaptors/dm_network.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/network_adaptors
copying bmtk/builder/network_adaptors/edge_props_table.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/network_adaptors
copying bmtk/builder/network_adaptors/nxnetwork.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/network_adaptors
copying bmtk/builder/network_adaptors/network.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/network_adaptors
copying bmtk/builder/network_adaptors/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/network_adaptors
copying bmtk/builder/network_adaptors/dm_network_orig.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/network_adaptors
copying bmtk/builder/network_adaptors/edges_collator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/network_adaptors
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/bionet
copying bmtk/builder/bionet/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/bionet
copying bmtk/builder/bionet/swc_reader.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/bionet
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/edges_sorter
copying bmtk/builder/edges_sorter/memory_sorter.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/edges_sorter
copying bmtk/builder/edges_sorter/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/edges_sorter
copying bmtk/builder/edges_sorter/merge_sorter.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/edges_sorter
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/auxi
copying bmtk/builder/auxi/edge_connectors.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/auxi
copying bmtk/builder/auxi/node_params.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/auxi
copying bmtk/builder/auxi/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/auxi
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet
copying bmtk/simulator/pointnet/utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet
copying bmtk/simulator/pointnet/pyfunction_cache.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet
copying bmtk/simulator/pointnet/gids.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet
copying bmtk/simulator/pointnet/nest_utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet
copying bmtk/simulator/pointnet/config.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet
copying bmtk/simulator/pointnet/property_map.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet
copying bmtk/simulator/pointnet/sonata_adaptors.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet
copying bmtk/simulator/pointnet/glif_utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet
copying bmtk/simulator/pointnet/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet
copying bmtk/simulator/pointnet/io_tools.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet
copying bmtk/simulator/pointnet/pointnetwork.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet
copying bmtk/simulator/pointnet/pointsimulator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/cell_models.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/auditory_processing.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/filtersimulator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/pyfunction_cache.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/cell.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/config.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/filternetwork.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/sonata_adaptors.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/transfer_functions.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/filters.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/io_tools.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/popnet
copying bmtk/simulator/popnet/utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/popnet
copying bmtk/simulator/popnet/popnetwork.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/popnet
copying bmtk/simulator/popnet/popnode.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/popnet
copying bmtk/simulator/popnet/config.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/popnet
copying bmtk/simulator/popnet/popedge.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/popnet
copying bmtk/simulator/popnet/sonata_adaptors.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/popnet
copying bmtk/simulator/popnet/popsimulator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/popnet
copying bmtk/simulator/popnet/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/popnet
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/utils
copying bmtk/simulator/utils/simulation_reports.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/utils
copying bmtk/simulator/utils/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/utils
copying bmtk/simulator/utils/simulation_inputs.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/utils
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/iclamp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/pyfunction_cache.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/gids.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/cell.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/config.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/seclamp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/sonata_adaptors.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/nrn.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/morphology.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/bionetwork.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/virtualcell.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/io_tools.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/pointsomacell.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/biosimulator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/pointprocesscell.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/biocell.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/nml_reader.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core
copying bmtk/simulator/core/simulation_config_validator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core
copying bmtk/simulator/core/network_reader.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core
copying bmtk/simulator/core/pyfunction_cache.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core
copying bmtk/simulator/core/edge_population.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core
copying bmtk/simulator/core/simulator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core
copying bmtk/simulator/core/simulator_network.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core
copying bmtk/simulator/core/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core
copying bmtk/simulator/core/simulation_config.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core
copying bmtk/simulator/core/io_tools.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core
copying bmtk/simulator/core/node_sets.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core
copying bmtk/simulator/core/node_population.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core
copying bmtk/simulator/core/graph.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet/modules
copying bmtk/simulator/pointnet/modules/multimeter_reporter.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet/modules
copying bmtk/simulator/pointnet/modules/spikes_inputs.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet/modules
copying bmtk/simulator/pointnet/modules/iclamp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet/modules
copying bmtk/simulator/pointnet/modules/sim_module.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet/modules
copying bmtk/simulator/pointnet/modules/ecephys_module.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet/modules
copying bmtk/simulator/pointnet/modules/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet/modules
copying bmtk/simulator/pointnet/modules/record_spikes.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet/modules
copying bmtk/simulator/pointnet/modules/weight_recorder.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet/modules
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet/default_setters
copying bmtk/simulator/pointnet/default_setters/cell_models.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet/default_setters
copying bmtk/simulator/pointnet/default_setters/synapse_models.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet/default_setters
copying bmtk/simulator/pointnet/default_setters/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet/default_setters
copying bmtk/simulator/pointnet/default_setters/synaptic_weights.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet/default_setters
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/util_fns.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/cellmetrics.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/lnunit.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/cellmodel.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/singleunitcell.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/temporalfilter.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/linearfilter.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/lattice_unit_constructor.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/fitfuns.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/lgnmodel1.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/cursor.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/transferfunction.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/poissongeneration.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/kernel.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/movie.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/gaborfilter.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/utilities.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/waveletfilter.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/make_cell_list.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/spatialfilter.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/modules
copying bmtk/simulator/filternet/modules/create_spikes.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/modules
copying bmtk/simulator/filternet/modules/base.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/modules
copying bmtk/simulator/filternet/modules/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/modules
copying bmtk/simulator/filternet/modules/record_rates.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/modules
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/default_setters
copying bmtk/simulator/filternet/default_setters/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/default_setters
copying bmtk/simulator/filternet/default_setters/cell_loaders.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/default_setters
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/comsol.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/ecp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/iclamp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/seclamp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/sim_module.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/xstim_waveforms.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/xstim.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/ecephys_module.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/record_netcons.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/record_clamp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/record_spikes.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/record_cellvars.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/save_synapses.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/modules
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/default_setters
copying bmtk/simulator/bionet/default_setters/cell_models.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/default_setters
copying bmtk/simulator/bionet/default_setters/synapse_models.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/default_setters
copying bmtk/simulator/bionet/default_setters/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/default_setters
copying bmtk/simulator/bionet/default_setters/synaptic_weights.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/default_setters
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core/sonata_reader
copying bmtk/simulator/core/sonata_reader/network_reader.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core/sonata_reader
copying bmtk/simulator/core/sonata_reader/node_adaptor.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core/sonata_reader
copying bmtk/simulator/core/sonata_reader/edge_adaptor.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core/sonata_reader
copying bmtk/simulator/core/sonata_reader/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core/sonata_reader
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core/modules
copying bmtk/simulator/core/modules/iclamp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core/modules
copying bmtk/simulator/core/modules/ecephys_module.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core/modules
copying bmtk/simulator/core/modules/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core/modules
copying bmtk/simulator/core/modules/simulator_module.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core/modules
running egg_info
creating bmtk.egg-info
writing bmtk.egg-info/PKG-INFO
writing dependency_links to bmtk.egg-info/dependency_links.txt
writing requirements to bmtk.egg-info/requires.txt
writing top-level names to bmtk.egg-info/top_level.txt
writing manifest file 'bmtk.egg-info/SOURCES.txt'
reading manifest file 'bmtk.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.txt' under directory 'bmtk'
warning: no files found matching '*.cfg' under directory 'bmtk'
adding license file 'LICENSE.txt'
writing manifest file 'bmtk.egg-info/SOURCES.txt'
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.simulator.bionet.default_templates' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.simulator.bionet.default_templates' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.simulator.bionet.default_templates' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.simulator.bionet.default_templates' to be distributed and are
already explicitly excluding 'bmtk.simulator.bionet.default_templates' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.simulator.bionet.import3d' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.simulator.bionet.import3d' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.simulator.bionet.import3d' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.simulator.bionet.import3d' to be distributed and are
already explicitly excluding 'bmtk.simulator.bionet.import3d' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.simulator.bionet.schemas' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.simulator.bionet.schemas' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.simulator.bionet.schemas' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.simulator.bionet.schemas' to be distributed and are
already explicitly excluding 'bmtk.simulator.bionet.schemas' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.simulator.core.sonata_schemas' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.simulator.core.sonata_schemas' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.simulator.core.sonata_schemas' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.simulator.core.sonata_schemas' to be distributed and are
already explicitly excluding 'bmtk.simulator.core.sonata_schemas' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.simulator.filternet.lgnmodel.cell_metrics' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.simulator.filternet.lgnmodel.cell_metrics' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.simulator.filternet.lgnmodel.cell_metrics' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.simulator.filternet.lgnmodel.cell_metrics' to be distributed and are
already explicitly excluding 'bmtk.simulator.filternet.lgnmodel.cell_metrics' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.bionet' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.bionet' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.bionet' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.bionet' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.bionet' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.bionet.biophysical_neuron_models' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.bionet.biophysical_neuron_models' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.bionet.biophysical_neuron_models' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.bionet.biophysical_neuron_models' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.bionet.biophysical_neuron_models' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.bionet.filter_models' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.bionet.filter_models' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.bionet.filter_models' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.bionet.filter_models' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.bionet.filter_models' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.bionet.mechanisms.modfiles' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.bionet.mechanisms.modfiles' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.bionet.mechanisms.modfiles' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.bionet.mechanisms.modfiles' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.bionet.mechanisms.modfiles' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.bionet.morphologies' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.bionet.morphologies' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.bionet.morphologies' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.bionet.morphologies' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.bionet.morphologies' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.bionet.point_neuron_models' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.bionet.point_neuron_models' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.bionet.point_neuron_models' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.bionet.point_neuron_models' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.bionet.point_neuron_models' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.bionet.synaptic_models' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.bionet.synaptic_models' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.bionet.synaptic_models' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.bionet.synaptic_models' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.bionet.synaptic_models' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.bionet.templates' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.bionet.templates' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.bionet.templates' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.bionet.templates' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.bionet.templates' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.filternet' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.filternet' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.filternet' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.filternet' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.filternet' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.filternet.filter_models' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.filternet.filter_models' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.filternet.filter_models' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.filternet.filter_models' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.filternet.filter_models' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.pointnet' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.pointnet' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.pointnet' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.pointnet' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.pointnet' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.pointnet.filter_models' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.pointnet.filter_models' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.pointnet.filter_models' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.pointnet.filter_models' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.pointnet.filter_models' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.pointnet.point_neuron_models' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.pointnet.point_neuron_models' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.pointnet.point_neuron_models' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.pointnet.point_neuron_models' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.pointnet.point_neuron_models' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.pointnet.synaptic_models' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.pointnet.synaptic_models' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.pointnet.synaptic_models' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.pointnet.synaptic_models' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.pointnet.synaptic_models' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.popnet' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.popnet' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.popnet' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.popnet' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.popnet' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.popnet.population_models' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.popnet.population_models' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.popnet.population_models' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.popnet.population_models' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.popnet.population_models' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.popnet.synaptic_models' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.popnet.synaptic_models' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.popnet.synaptic_models' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.popnet.synaptic_models' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.popnet.synaptic_models' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts
copying bmtk/utils/scripts/sonata.circuit_config.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts
copying bmtk/utils/scripts/sonata.simulation_config.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet
copying bmtk/utils/scripts/bionet/default_config.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet
copying bmtk/utils/scripts/bionet/run_bionet.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
copying bmtk/utils/scripts/bionet/biophysical_neuron_models/318331342_fit.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
copying bmtk/utils/scripts/bionet/biophysical_neuron_models/472363762_fit.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
copying bmtk/utils/scripts/bionet/biophysical_neuron_models/472912177_fit.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
copying bmtk/utils/scripts/bionet/biophysical_neuron_models/473862421_fit.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
copying bmtk/utils/scripts/bionet/biophysical_neuron_models/473863035_fit.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
copying bmtk/utils/scripts/bionet/biophysical_neuron_models/473863510_fit.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
copying bmtk/utils/scripts/bionet/biophysical_neuron_models/485184849_fit.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/sOFF_TF1.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/sOFF_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/sOFF_TF2.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/sOFF_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/sOFF_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/sON_TF1.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/sON_TF2.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/sON_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/sON_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/tOFF_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/tOFF_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/tOFF_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/tON_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/tON_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/tON_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/tON_TF8_demo.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/CaDynamics.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Ca_HVA.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Ca_LVA.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Ih.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Im.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Im_v2.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/K_P.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/K_T.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Kd.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Kv2like.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Kv3_1.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/NaTa.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/NaTs.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/NaV.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Nap.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/SK.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/vecevent.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/morphologies
copying bmtk/utils/scripts/bionet/morphologies/Nr5a1_471087815_m.swc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/morphologies
copying bmtk/utils/scripts/bionet/morphologies/Pvalb_469628681_m.swc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/morphologies
copying bmtk/utils/scripts/bionet/morphologies/Pvalb_470522102_m.swc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/morphologies
copying bmtk/utils/scripts/bionet/morphologies/Rorb_325404214_m.swc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/morphologies
copying bmtk/utils/scripts/bionet/morphologies/Scnn1a_473845048_m.swc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/morphologies
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/point_neuron_models
copying bmtk/utils/scripts/bionet/point_neuron_models/IntFire1_exc_1.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/point_neuron_models
copying bmtk/utils/scripts/bionet/point_neuron_models/IntFire1_inh_1.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/point_neuron_models
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/synaptic_models
copying bmtk/utils/scripts/bionet/synaptic_models/AMPA_ExcToExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/synaptic_models
copying bmtk/utils/scripts/bionet/synaptic_models/AMPA_ExcToInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/synaptic_models
copying bmtk/utils/scripts/bionet/synaptic_models/GABA_InhToExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/synaptic_models
copying bmtk/utils/scripts/bionet/synaptic_models/GABA_InhToInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/synaptic_models
copying bmtk/utils/scripts/bionet/synaptic_models/instantaneousExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/synaptic_models
copying bmtk/utils/scripts/bionet/synaptic_models/instantaneousInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/synaptic_models
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/templates
copying bmtk/utils/scripts/bionet/templates/BioAllen_old.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/templates
copying bmtk/utils/scripts/bionet/templates/BioAxonStub.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/templates
copying bmtk/utils/scripts/bionet/templates/Biophys1.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/templates
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet
copying bmtk/utils/scripts/filternet/run_filternet.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/sOFF_TF1.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/sOFF_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/sOFF_TF2.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/sOFF_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/sOFF_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/sON_TF1.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/sON_TF2.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/sON_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/sON_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/tOFF_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/tOFF_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/tOFF_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/tON_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/tON_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/tON_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/tON_TF8_demo.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet
copying bmtk/utils/scripts/pointnet/run_pointnet.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/sOFF_TF1.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/sOFF_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/sOFF_TF2.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/sOFF_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/sOFF_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/sON_TF1.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/sON_TF2.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/sON_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/sON_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/tOFF_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/tOFF_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/tOFF_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/tON_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/tON_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/tON_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/tON_TF8_demo.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/point_neuron_models
copying bmtk/utils/scripts/pointnet/point_neuron_models/472363762_point.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/point_neuron_models
copying bmtk/utils/scripts/pointnet/point_neuron_models/472912177_point.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/point_neuron_models
copying bmtk/utils/scripts/pointnet/point_neuron_models/473862421_point.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/point_neuron_models
copying bmtk/utils/scripts/pointnet/point_neuron_models/473863035_point.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/point_neuron_models
copying bmtk/utils/scripts/pointnet/point_neuron_models/473863510_point.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/point_neuron_models
copying bmtk/utils/scripts/pointnet/point_neuron_models/IntFire1_exc_point.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/point_neuron_models
copying bmtk/utils/scripts/pointnet/point_neuron_models/IntFire1_inh_point.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/point_neuron_models
copying bmtk/utils/scripts/pointnet/point_neuron_models/filter_point.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/point_neuron_models
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/synaptic_models
copying bmtk/utils/scripts/pointnet/synaptic_models/ExcToExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/synaptic_models
copying bmtk/utils/scripts/pointnet/synaptic_models/ExcToInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/synaptic_models
copying bmtk/utils/scripts/pointnet/synaptic_models/InhToExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/synaptic_models
copying bmtk/utils/scripts/pointnet/synaptic_models/InhToInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/synaptic_models
copying bmtk/utils/scripts/pointnet/synaptic_models/instantaneousExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/synaptic_models
copying bmtk/utils/scripts/pointnet/synaptic_models/instantaneousInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/synaptic_models
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/popnet
copying bmtk/utils/scripts/popnet/run_popnet.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/popnet
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/popnet/population_models
copying bmtk/utils/scripts/popnet/population_models/exc_model.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/popnet/population_models
copying bmtk/utils/scripts/popnet/population_models/inh_model.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/popnet/population_models
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/popnet/synaptic_models
copying bmtk/utils/scripts/popnet/synaptic_models/ExcToExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/popnet/synaptic_models
copying bmtk/utils/scripts/popnet/synaptic_models/ExcToInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/popnet/synaptic_models
copying bmtk/utils/scripts/popnet/synaptic_models/InhToExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/popnet/synaptic_models
copying bmtk/utils/scripts/popnet/synaptic_models/InhToInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/popnet/synaptic_models
copying bmtk/utils/scripts/popnet/synaptic_models/input_ExcToExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/popnet/synaptic_models
copying bmtk/utils/scripts/popnet/synaptic_models/input_ExcToInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/popnet/synaptic_models
copying bmtk/utils/sonata/config/config_schema.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata/config
copying bmtk/simulator/bionet/README.md -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/import3d.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/default_templates
copying bmtk/simulator/bionet/default_templates/BioAxonStub.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/default_templates
copying bmtk/simulator/bionet/default_templates/Biophys1.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/default_templates
copying bmtk/simulator/bionet/default_templates/advance.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/default_templates
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/import3d
copying bmtk/simulator/bionet/import3d/import3d_gui.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/import3d
copying bmtk/simulator/bionet/import3d/import3d_sec.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/import3d
copying bmtk/simulator/bionet/import3d/read_morphml.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/import3d
copying bmtk/simulator/bionet/import3d/read_nlcda.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/import3d
copying bmtk/simulator/bionet/import3d/read_nlcda3.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/import3d
copying bmtk/simulator/bionet/import3d/read_nts.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/import3d
copying bmtk/simulator/bionet/import3d/read_swc.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/import3d
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/schemas
copying bmtk/simulator/bionet/schemas/config_schema.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/schemas
copying bmtk/simulator/bionet/schemas/csv_edge_types.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/schemas
copying bmtk/simulator/bionet/schemas/csv_node_types_external.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/schemas
copying bmtk/simulator/bionet/schemas/csv_node_types_internal.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/schemas
copying bmtk/simulator/bionet/schemas/csv_nodes_external.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/schemas
copying bmtk/simulator/bionet/schemas/csv_nodes_internal.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/schemas
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core/sonata_schemas
copying bmtk/simulator/core/sonata_schemas/config_schema.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core/sonata_schemas
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
copying bmtk/simulator/filternet/lgnmodel/cell_metrics/sOFF_cell_data.csv -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
copying bmtk/simulator/filternet/lgnmodel/cell_metrics/sON_cell_data.csv -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
copying bmtk/simulator/filternet/lgnmodel/cell_metrics/sus_sus_cells_v3.csv -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
copying bmtk/simulator/filternet/lgnmodel/cell_metrics/tOFF_cell_data.csv -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
copying bmtk/simulator/filternet/lgnmodel/cell_metrics/tON_cell_data.csv -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
copying bmtk/simulator/filternet/lgnmodel/cell_metrics/trans_sus_cells_v3.csv -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
copying bmtk/simulator/core/modules/ndx-aibs-ecephys.extension.yaml -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core/modules
copying bmtk/simulator/core/modules/ndx-aibs-ecephys.namespace.yaml -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core/modules
I: pybuild base:311: /usr/bin/python3 setup.py build
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require'
warnings.warn(msg)
running build
running build_py
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk
copying bmtk/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/analyzer
copying bmtk/analyzer/spikes_analyzer.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/analyzer
copying bmtk/analyzer/firing_rates.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/analyzer
copying bmtk/analyzer/utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/analyzer
copying bmtk/analyzer/ecp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/analyzer
copying bmtk/analyzer/edges.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/analyzer
copying bmtk/analyzer/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/analyzer
copying bmtk/analyzer/compartment.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/analyzer
copying bmtk/analyzer/spike_trains.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/analyzer
copying bmtk/analyzer/io_tools.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/analyzer
copying bmtk/analyzer/cell_vars.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/analyzer
copying bmtk/analyzer/spikes_loader.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/analyzer
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils
copying bmtk/utils/sim_setup.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils
copying bmtk/utils/hdf5_helper.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils
copying bmtk/utils/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils
copying bmtk/utils/lazy_property.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder
copying bmtk/builder/node_set.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder
copying bmtk/builder/builder_utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder
copying bmtk/builder/id_generator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder
copying bmtk/builder/network_builder.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder
copying bmtk/builder/edge.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder
copying bmtk/builder/networks.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder
copying bmtk/builder/index_builders.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder
copying bmtk/builder/node.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder
copying bmtk/builder/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder
copying bmtk/builder/connection_map.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder
copying bmtk/builder/iterator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder
copying bmtk/builder/node_pool.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder
copying bmtk/builder/connector.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder
copying bmtk/builder/functor_cache.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator
copying bmtk/simulator/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata
copying bmtk/utils/sonata/file.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata
copying bmtk/utils/sonata/utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata
copying bmtk/utils/sonata/edge.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata
copying bmtk/utils/sonata/population.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata
copying bmtk/utils/sonata/file_root.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata
copying bmtk/utils/sonata/column_property.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata
copying bmtk/utils/sonata/node.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata
copying bmtk/utils/sonata/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata
copying bmtk/utils/sonata/edge_stats.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata
copying bmtk/utils/sonata/types_table.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata
copying bmtk/utils/sonata/group.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/compile_mechanisms
copying bmtk/utils/compile_mechanisms/compile_mechanisms.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/compile_mechanisms
copying bmtk/utils/compile_mechanisms/__main__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/compile_mechanisms
copying bmtk/utils/compile_mechanisms/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/compile_mechanisms
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/cell_types_db
copying bmtk/utils/cell_types_db/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/cell_types_db
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports
copying bmtk/utils/reports/current_writer.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports
copying bmtk/utils/reports/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/create_environment
copying bmtk/utils/create_environment/create_environment.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/create_environment
copying bmtk/utils/create_environment/env_builder.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/create_environment
copying bmtk/utils/create_environment/__main__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/create_environment
copying bmtk/utils/create_environment/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/create_environment
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/io
copying bmtk/utils/io/firing_rates.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/io
copying bmtk/utils/io/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/io
copying bmtk/utils/io/spike_trains.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/io
copying bmtk/utils/io/ioutils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/io
copying bmtk/utils/io/cell_vars.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/io
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata/config
copying bmtk/utils/sonata/config/sonata_config.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata/config
copying bmtk/utils/sonata/config/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata/config
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/spike_trains
copying bmtk/utils/reports/spike_trains/spikes_file_writers.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/spike_trains
copying bmtk/utils/reports/spike_trains/spike_train_readers.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/spike_trains
copying bmtk/utils/reports/spike_trains/core.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/spike_trains
copying bmtk/utils/reports/spike_trains/spike_trains_api.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/spike_trains
copying bmtk/utils/reports/spike_trains/stats.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/spike_trains
copying bmtk/utils/reports/spike_trains/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/spike_trains
copying bmtk/utils/reports/spike_trains/spike_trains.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/spike_trains
copying bmtk/utils/reports/spike_trains/plotting.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/spike_trains
copying bmtk/utils/reports/spike_trains/spike_train_buffer.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/spike_trains
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/compartment
copying bmtk/utils/reports/compartment/core.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/compartment
copying bmtk/utils/reports/compartment/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/compartment
copying bmtk/utils/reports/compartment/compartment_writer.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/compartment
copying bmtk/utils/reports/compartment/plotting.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/compartment
copying bmtk/utils/reports/compartment/compartment_report.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/compartment
copying bmtk/utils/reports/compartment/compartment_reader.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/compartment
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/network_adaptors
copying bmtk/builder/network_adaptors/dm_network.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/network_adaptors
copying bmtk/builder/network_adaptors/edge_props_table.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/network_adaptors
copying bmtk/builder/network_adaptors/nxnetwork.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/network_adaptors
copying bmtk/builder/network_adaptors/network.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/network_adaptors
copying bmtk/builder/network_adaptors/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/network_adaptors
copying bmtk/builder/network_adaptors/dm_network_orig.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/network_adaptors
copying bmtk/builder/network_adaptors/edges_collator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/network_adaptors
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/bionet
copying bmtk/builder/bionet/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/bionet
copying bmtk/builder/bionet/swc_reader.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/bionet
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/edges_sorter
copying bmtk/builder/edges_sorter/memory_sorter.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/edges_sorter
copying bmtk/builder/edges_sorter/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/edges_sorter
copying bmtk/builder/edges_sorter/merge_sorter.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/edges_sorter
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/auxi
copying bmtk/builder/auxi/edge_connectors.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/auxi
copying bmtk/builder/auxi/node_params.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/auxi
copying bmtk/builder/auxi/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/auxi
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet
copying bmtk/simulator/pointnet/utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet
copying bmtk/simulator/pointnet/pyfunction_cache.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet
copying bmtk/simulator/pointnet/gids.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet
copying bmtk/simulator/pointnet/nest_utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet
copying bmtk/simulator/pointnet/config.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet
copying bmtk/simulator/pointnet/property_map.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet
copying bmtk/simulator/pointnet/sonata_adaptors.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet
copying bmtk/simulator/pointnet/glif_utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet
copying bmtk/simulator/pointnet/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet
copying bmtk/simulator/pointnet/io_tools.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet
copying bmtk/simulator/pointnet/pointnetwork.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet
copying bmtk/simulator/pointnet/pointsimulator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/cell_models.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/auditory_processing.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/filtersimulator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/pyfunction_cache.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/cell.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/config.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/filternetwork.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/sonata_adaptors.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/transfer_functions.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/filters.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/io_tools.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/popnet
copying bmtk/simulator/popnet/utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/popnet
copying bmtk/simulator/popnet/popnetwork.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/popnet
copying bmtk/simulator/popnet/popnode.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/popnet
copying bmtk/simulator/popnet/config.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/popnet
copying bmtk/simulator/popnet/popedge.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/popnet
copying bmtk/simulator/popnet/sonata_adaptors.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/popnet
copying bmtk/simulator/popnet/popsimulator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/popnet
copying bmtk/simulator/popnet/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/popnet
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/utils
copying bmtk/simulator/utils/simulation_reports.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/utils
copying bmtk/simulator/utils/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/utils
copying bmtk/simulator/utils/simulation_inputs.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/utils
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/iclamp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/pyfunction_cache.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/gids.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/cell.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/config.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/seclamp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/sonata_adaptors.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/nrn.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/morphology.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/bionetwork.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/virtualcell.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/io_tools.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/pointsomacell.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/biosimulator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/pointprocesscell.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/biocell.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/nml_reader.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core
copying bmtk/simulator/core/simulation_config_validator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core
copying bmtk/simulator/core/network_reader.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core
copying bmtk/simulator/core/pyfunction_cache.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core
copying bmtk/simulator/core/edge_population.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core
copying bmtk/simulator/core/simulator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core
copying bmtk/simulator/core/simulator_network.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core
copying bmtk/simulator/core/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core
copying bmtk/simulator/core/simulation_config.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core
copying bmtk/simulator/core/io_tools.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core
copying bmtk/simulator/core/node_sets.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core
copying bmtk/simulator/core/node_population.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core
copying bmtk/simulator/core/graph.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet/modules
copying bmtk/simulator/pointnet/modules/multimeter_reporter.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet/modules
copying bmtk/simulator/pointnet/modules/spikes_inputs.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet/modules
copying bmtk/simulator/pointnet/modules/iclamp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet/modules
copying bmtk/simulator/pointnet/modules/sim_module.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet/modules
copying bmtk/simulator/pointnet/modules/ecephys_module.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet/modules
copying bmtk/simulator/pointnet/modules/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet/modules
copying bmtk/simulator/pointnet/modules/record_spikes.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet/modules
copying bmtk/simulator/pointnet/modules/weight_recorder.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet/modules
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet/default_setters
copying bmtk/simulator/pointnet/default_setters/cell_models.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet/default_setters
copying bmtk/simulator/pointnet/default_setters/synapse_models.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet/default_setters
copying bmtk/simulator/pointnet/default_setters/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet/default_setters
copying bmtk/simulator/pointnet/default_setters/synaptic_weights.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet/default_setters
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/util_fns.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/cellmetrics.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/lnunit.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/cellmodel.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/singleunitcell.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/temporalfilter.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/linearfilter.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/lattice_unit_constructor.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/fitfuns.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/lgnmodel1.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/cursor.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/transferfunction.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/poissongeneration.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/kernel.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/movie.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/gaborfilter.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/utilities.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/waveletfilter.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/make_cell_list.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/spatialfilter.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/modules
copying bmtk/simulator/filternet/modules/create_spikes.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/modules
copying bmtk/simulator/filternet/modules/base.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/modules
copying bmtk/simulator/filternet/modules/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/modules
copying bmtk/simulator/filternet/modules/record_rates.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/modules
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/default_setters
copying bmtk/simulator/filternet/default_setters/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/default_setters
copying bmtk/simulator/filternet/default_setters/cell_loaders.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/default_setters
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/comsol.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/ecp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/iclamp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/seclamp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/sim_module.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/xstim_waveforms.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/xstim.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/ecephys_module.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/record_netcons.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/record_clamp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/record_spikes.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/record_cellvars.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/save_synapses.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/modules
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/default_setters
copying bmtk/simulator/bionet/default_setters/cell_models.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/default_setters
copying bmtk/simulator/bionet/default_setters/synapse_models.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/default_setters
copying bmtk/simulator/bionet/default_setters/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/default_setters
copying bmtk/simulator/bionet/default_setters/synaptic_weights.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/default_setters
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core/sonata_reader
copying bmtk/simulator/core/sonata_reader/network_reader.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core/sonata_reader
copying bmtk/simulator/core/sonata_reader/node_adaptor.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core/sonata_reader
copying bmtk/simulator/core/sonata_reader/edge_adaptor.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core/sonata_reader
copying bmtk/simulator/core/sonata_reader/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core/sonata_reader
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core/modules
copying bmtk/simulator/core/modules/iclamp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core/modules
copying bmtk/simulator/core/modules/ecephys_module.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core/modules
copying bmtk/simulator/core/modules/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core/modules
copying bmtk/simulator/core/modules/simulator_module.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core/modules
running egg_info
writing bmtk.egg-info/PKG-INFO
writing dependency_links to bmtk.egg-info/dependency_links.txt
writing requirements to bmtk.egg-info/requires.txt
writing top-level names to bmtk.egg-info/top_level.txt
reading manifest file 'bmtk.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.txt' under directory 'bmtk'
warning: no files found matching '*.cfg' under directory 'bmtk'
adding license file 'LICENSE.txt'
writing manifest file 'bmtk.egg-info/SOURCES.txt'
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.simulator.bionet.default_templates' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.simulator.bionet.default_templates' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.simulator.bionet.default_templates' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.simulator.bionet.default_templates' to be distributed and are
already explicitly excluding 'bmtk.simulator.bionet.default_templates' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.simulator.bionet.import3d' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.simulator.bionet.import3d' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.simulator.bionet.import3d' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.simulator.bionet.import3d' to be distributed and are
already explicitly excluding 'bmtk.simulator.bionet.import3d' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.simulator.bionet.schemas' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.simulator.bionet.schemas' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.simulator.bionet.schemas' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.simulator.bionet.schemas' to be distributed and are
already explicitly excluding 'bmtk.simulator.bionet.schemas' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.simulator.core.sonata_schemas' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.simulator.core.sonata_schemas' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.simulator.core.sonata_schemas' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.simulator.core.sonata_schemas' to be distributed and are
already explicitly excluding 'bmtk.simulator.core.sonata_schemas' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.simulator.filternet.lgnmodel.cell_metrics' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.simulator.filternet.lgnmodel.cell_metrics' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.simulator.filternet.lgnmodel.cell_metrics' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.simulator.filternet.lgnmodel.cell_metrics' to be distributed and are
already explicitly excluding 'bmtk.simulator.filternet.lgnmodel.cell_metrics' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.bionet' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.bionet' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.bionet' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.bionet' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.bionet' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.bionet.biophysical_neuron_models' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.bionet.biophysical_neuron_models' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.bionet.biophysical_neuron_models' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.bionet.biophysical_neuron_models' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.bionet.biophysical_neuron_models' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.bionet.filter_models' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.bionet.filter_models' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.bionet.filter_models' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.bionet.filter_models' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.bionet.filter_models' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.bionet.mechanisms.modfiles' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.bionet.mechanisms.modfiles' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.bionet.mechanisms.modfiles' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.bionet.mechanisms.modfiles' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.bionet.mechanisms.modfiles' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.bionet.morphologies' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.bionet.morphologies' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.bionet.morphologies' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.bionet.morphologies' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.bionet.morphologies' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.bionet.point_neuron_models' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.bionet.point_neuron_models' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.bionet.point_neuron_models' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.bionet.point_neuron_models' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.bionet.point_neuron_models' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.bionet.synaptic_models' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.bionet.synaptic_models' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.bionet.synaptic_models' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.bionet.synaptic_models' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.bionet.synaptic_models' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.bionet.templates' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.bionet.templates' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.bionet.templates' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.bionet.templates' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.bionet.templates' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.filternet' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.filternet' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.filternet' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.filternet' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.filternet' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.filternet.filter_models' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.filternet.filter_models' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.filternet.filter_models' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.filternet.filter_models' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.filternet.filter_models' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.pointnet' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.pointnet' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.pointnet' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.pointnet' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.pointnet' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.pointnet.filter_models' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.pointnet.filter_models' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.pointnet.filter_models' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.pointnet.filter_models' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.pointnet.filter_models' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.pointnet.point_neuron_models' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.pointnet.point_neuron_models' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.pointnet.point_neuron_models' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.pointnet.point_neuron_models' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.pointnet.point_neuron_models' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.pointnet.synaptic_models' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.pointnet.synaptic_models' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.pointnet.synaptic_models' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.pointnet.synaptic_models' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.pointnet.synaptic_models' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.popnet' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.popnet' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.popnet' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.popnet' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.popnet' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.popnet.population_models' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.popnet.population_models' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.popnet.population_models' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.popnet.population_models' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.popnet.population_models' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.popnet.synaptic_models' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.popnet.synaptic_models' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.popnet.synaptic_models' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.popnet.synaptic_models' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.popnet.synaptic_models' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts
copying bmtk/utils/scripts/sonata.circuit_config.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts
copying bmtk/utils/scripts/sonata.simulation_config.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet
copying bmtk/utils/scripts/bionet/default_config.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet
copying bmtk/utils/scripts/bionet/run_bionet.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
copying bmtk/utils/scripts/bionet/biophysical_neuron_models/318331342_fit.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
copying bmtk/utils/scripts/bionet/biophysical_neuron_models/472363762_fit.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
copying bmtk/utils/scripts/bionet/biophysical_neuron_models/472912177_fit.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
copying bmtk/utils/scripts/bionet/biophysical_neuron_models/473862421_fit.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
copying bmtk/utils/scripts/bionet/biophysical_neuron_models/473863035_fit.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
copying bmtk/utils/scripts/bionet/biophysical_neuron_models/473863510_fit.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
copying bmtk/utils/scripts/bionet/biophysical_neuron_models/485184849_fit.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/sOFF_TF1.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/sOFF_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/sOFF_TF2.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/sOFF_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/sOFF_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/sON_TF1.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/sON_TF2.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/sON_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/sON_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/tOFF_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/tOFF_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/tOFF_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/tON_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/tON_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/tON_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/tON_TF8_demo.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/CaDynamics.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Ca_HVA.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Ca_LVA.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Ih.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Im.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Im_v2.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/K_P.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/K_T.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Kd.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Kv2like.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Kv3_1.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/NaTa.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/NaTs.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/NaV.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Nap.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/SK.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/vecevent.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/morphologies
copying bmtk/utils/scripts/bionet/morphologies/Nr5a1_471087815_m.swc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/morphologies
copying bmtk/utils/scripts/bionet/morphologies/Pvalb_469628681_m.swc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/morphologies
copying bmtk/utils/scripts/bionet/morphologies/Pvalb_470522102_m.swc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/morphologies
copying bmtk/utils/scripts/bionet/morphologies/Rorb_325404214_m.swc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/morphologies
copying bmtk/utils/scripts/bionet/morphologies/Scnn1a_473845048_m.swc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/morphologies
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/point_neuron_models
copying bmtk/utils/scripts/bionet/point_neuron_models/IntFire1_exc_1.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/point_neuron_models
copying bmtk/utils/scripts/bionet/point_neuron_models/IntFire1_inh_1.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/point_neuron_models
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/synaptic_models
copying bmtk/utils/scripts/bionet/synaptic_models/AMPA_ExcToExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/synaptic_models
copying bmtk/utils/scripts/bionet/synaptic_models/AMPA_ExcToInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/synaptic_models
copying bmtk/utils/scripts/bionet/synaptic_models/GABA_InhToExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/synaptic_models
copying bmtk/utils/scripts/bionet/synaptic_models/GABA_InhToInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/synaptic_models
copying bmtk/utils/scripts/bionet/synaptic_models/instantaneousExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/synaptic_models
copying bmtk/utils/scripts/bionet/synaptic_models/instantaneousInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/synaptic_models
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/templates
copying bmtk/utils/scripts/bionet/templates/BioAllen_old.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/templates
copying bmtk/utils/scripts/bionet/templates/BioAxonStub.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/templates
copying bmtk/utils/scripts/bionet/templates/Biophys1.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/templates
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet
copying bmtk/utils/scripts/filternet/run_filternet.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/sOFF_TF1.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/sOFF_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/sOFF_TF2.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/sOFF_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/sOFF_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/sON_TF1.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/sON_TF2.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/sON_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/sON_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/tOFF_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/tOFF_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/tOFF_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/tON_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/tON_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/tON_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/tON_TF8_demo.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet
copying bmtk/utils/scripts/pointnet/run_pointnet.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/sOFF_TF1.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/sOFF_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/sOFF_TF2.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/sOFF_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/sOFF_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/sON_TF1.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/sON_TF2.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/sON_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/sON_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/tOFF_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/tOFF_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/tOFF_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/tON_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/tON_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/tON_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/tON_TF8_demo.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/point_neuron_models
copying bmtk/utils/scripts/pointnet/point_neuron_models/472363762_point.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/point_neuron_models
copying bmtk/utils/scripts/pointnet/point_neuron_models/472912177_point.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/point_neuron_models
copying bmtk/utils/scripts/pointnet/point_neuron_models/473862421_point.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/point_neuron_models
copying bmtk/utils/scripts/pointnet/point_neuron_models/473863035_point.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/point_neuron_models
copying bmtk/utils/scripts/pointnet/point_neuron_models/473863510_point.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/point_neuron_models
copying bmtk/utils/scripts/pointnet/point_neuron_models/IntFire1_exc_point.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/point_neuron_models
copying bmtk/utils/scripts/pointnet/point_neuron_models/IntFire1_inh_point.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/point_neuron_models
copying bmtk/utils/scripts/pointnet/point_neuron_models/filter_point.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/point_neuron_models
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/synaptic_models
copying bmtk/utils/scripts/pointnet/synaptic_models/ExcToExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/synaptic_models
copying bmtk/utils/scripts/pointnet/synaptic_models/ExcToInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/synaptic_models
copying bmtk/utils/scripts/pointnet/synaptic_models/InhToExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/synaptic_models
copying bmtk/utils/scripts/pointnet/synaptic_models/InhToInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/synaptic_models
copying bmtk/utils/scripts/pointnet/synaptic_models/instantaneousExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/synaptic_models
copying bmtk/utils/scripts/pointnet/synaptic_models/instantaneousInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/synaptic_models
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/popnet
copying bmtk/utils/scripts/popnet/run_popnet.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/popnet
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/popnet/population_models
copying bmtk/utils/scripts/popnet/population_models/exc_model.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/popnet/population_models
copying bmtk/utils/scripts/popnet/population_models/inh_model.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/popnet/population_models
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/popnet/synaptic_models
copying bmtk/utils/scripts/popnet/synaptic_models/ExcToExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/popnet/synaptic_models
copying bmtk/utils/scripts/popnet/synaptic_models/ExcToInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/popnet/synaptic_models
copying bmtk/utils/scripts/popnet/synaptic_models/InhToExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/popnet/synaptic_models
copying bmtk/utils/scripts/popnet/synaptic_models/InhToInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/popnet/synaptic_models
copying bmtk/utils/scripts/popnet/synaptic_models/input_ExcToExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/popnet/synaptic_models
copying bmtk/utils/scripts/popnet/synaptic_models/input_ExcToInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/popnet/synaptic_models
copying bmtk/utils/sonata/config/config_schema.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata/config
copying bmtk/simulator/bionet/README.md -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/import3d.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/default_templates
copying bmtk/simulator/bionet/default_templates/BioAxonStub.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/default_templates
copying bmtk/simulator/bionet/default_templates/Biophys1.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/default_templates
copying bmtk/simulator/bionet/default_templates/advance.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/default_templates
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/import3d
copying bmtk/simulator/bionet/import3d/import3d_gui.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/import3d
copying bmtk/simulator/bionet/import3d/import3d_sec.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/import3d
copying bmtk/simulator/bionet/import3d/read_morphml.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/import3d
copying bmtk/simulator/bionet/import3d/read_nlcda.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/import3d
copying bmtk/simulator/bionet/import3d/read_nlcda3.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/import3d
copying bmtk/simulator/bionet/import3d/read_nts.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/import3d
copying bmtk/simulator/bionet/import3d/read_swc.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/import3d
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/schemas
copying bmtk/simulator/bionet/schemas/config_schema.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/schemas
copying bmtk/simulator/bionet/schemas/csv_edge_types.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/schemas
copying bmtk/simulator/bionet/schemas/csv_node_types_external.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/schemas
copying bmtk/simulator/bionet/schemas/csv_node_types_internal.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/schemas
copying bmtk/simulator/bionet/schemas/csv_nodes_external.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/schemas
copying bmtk/simulator/bionet/schemas/csv_nodes_internal.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/schemas
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core/sonata_schemas
copying bmtk/simulator/core/sonata_schemas/config_schema.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core/sonata_schemas
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
copying bmtk/simulator/filternet/lgnmodel/cell_metrics/sOFF_cell_data.csv -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
copying bmtk/simulator/filternet/lgnmodel/cell_metrics/sON_cell_data.csv -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
copying bmtk/simulator/filternet/lgnmodel/cell_metrics/sus_sus_cells_v3.csv -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
copying bmtk/simulator/filternet/lgnmodel/cell_metrics/tOFF_cell_data.csv -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
copying bmtk/simulator/filternet/lgnmodel/cell_metrics/tON_cell_data.csv -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
copying bmtk/simulator/filternet/lgnmodel/cell_metrics/trans_sus_cells_v3.csv -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
copying bmtk/simulator/core/modules/ndx-aibs-ecephys.extension.yaml -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core/modules
copying bmtk/simulator/core/modules/ndx-aibs-ecephys.namespace.yaml -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core/modules
sphinx-apidoc -f -o docs/autodocs/source/bmtk/ bmtk
PYTHONPATH=. python3 -m sphinx -N -bhtml docs/autodocs/source/ build/html # HTML generator
Running Sphinx v8.1.3
loading translations [en]... done
making output directory... done
WARNING: html_static_path entry '/usr/share/javascript/requirejs/require.min.js' does not exist
Converting `source_suffix = ['.rst', '.md']` to `source_suffix = {'.rst': 'restructuredtext', '.md': 'restructuredtext'}`.
[autosummary] generating autosummary for: ad_tutorials.rst, analyzer.rst, bionet.rst, bionet_config.rst, bionet_tutorial.rst, bmtk/bmtk.analyzer.rst, bmtk/bmtk.builder.auxi.rst, bmtk/bmtk.builder.bionet.rst, bmtk/bmtk.builder.edges_sorter.rst, bmtk/bmtk.builder.network_adaptors.rst, ..., tutorial_filter_models.ipynb, tutorial_multi_pop.ipynb, tutorial_pointnet_modeling.ipynb, tutorial_population_modeling.ipynb, tutorial_single_cell_clamped.ipynb, tutorial_single_cell_syn.ipynb, tutorial_single_pop.ipynb, tutorial_spike_trains_refractory.ipynb, tutorials.rst, workshop.rst
Matplotlib created a temporary cache directory at /tmp/matplotlib-k2ps2yxd because the default path (/sbuild-nonexistent/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
WARNING: Failed to import bmtk.tests.utils.reports.spike_trains.benchmark_spikes_buffers.
* AttributeError: module 'bmtk.tests.utils.reports.spike_trains' has no attribute 'benchmark_spikes_buffers'
* ModuleNotFoundError: No module named 'memory_profiler'
numprocs=1
WARNING: Failed to import bmtk.simulator.popnet.config.
* AttributeError: module 'bmtk.simulator' has no attribute 'popnet'
* ModuleNotFoundError: No module named 'dipde'
WARNING: Failed to import bmtk.simulator.popnet.popedge.
* AttributeError: module 'bmtk.simulator' has no attribute 'popnet'
* ModuleNotFoundError: No module named 'dipde'
WARNING: Failed to import bmtk.simulator.popnet.popnetwork.
* AttributeError: module 'bmtk.simulator' has no attribute 'popnet'
* ModuleNotFoundError: No module named 'dipde'
WARNING: Failed to import bmtk.simulator.popnet.popnode.
* AttributeError: module 'bmtk.simulator' has no attribute 'popnet'
* ModuleNotFoundError: No module named 'dipde'
WARNING: Failed to import bmtk.simulator.popnet.popsimulator.
* AttributeError: module 'bmtk.simulator' has no attribute 'popnet'
* ModuleNotFoundError: No module named 'dipde'
WARNING: Failed to import bmtk.simulator.popnet.
* AttributeError: module 'bmtk.simulator' has no attribute 'popnet'
* ModuleNotFoundError: No module named 'dipde'
NEURON mechanisms not found in /build/reproducible-path/bmtk-1.1.1+ds/bmtk/tests/simulator/bionet/components/mechanisms.
NEURON mechanisms not found in components/mechanisms.
NEURON mechanisms not found in components/mechanisms.
NEURON mechanisms not found in bmtk/tests/simulator/bionet/components/mechanisms.
Writing evaluated template result to /build/reproducible-path/bmtk-1.1.1+ds/build/html/_static/nbsphinx-code-cells.css
building [mo]: targets for 0 po files that are out of date
writing output...
building [html]: targets for 81 source files that are out of date
updating environment: [new config] 81 added, 0 changed, 0 removed
reading sources... [ 1%] ad_tutorials
reading sources... [ 2%] analyzer
reading sources... [ 4%] bionet
reading sources... [ 5%] bionet_config
reading sources... [ 6%] bionet_tutorial
reading sources... [ 7%] bmtk/bmtk
reading sources... [ 9%] bmtk/bmtk.analyzer
reading sources... [ 10%] bmtk/bmtk.builder
reading sources... [ 11%] bmtk/bmtk.builder.auxi
reading sources... [ 12%] bmtk/bmtk.builder.bionet
reading sources... [ 14%] bmtk/bmtk.builder.edges_sorter
reading sources... [ 15%] bmtk/bmtk.builder.network_adaptors
reading sources... [ 16%] bmtk/bmtk.simulator
reading sources... [ 17%] bmtk/bmtk.simulator.bionet
reading sources... [ 19%] bmtk/bmtk.simulator.bionet.default_setters
reading sources... [ 20%] bmtk/bmtk.simulator.bionet.modules
reading sources... [ 21%] bmtk/bmtk.simulator.core
reading sources... [ 22%] bmtk/bmtk.simulator.core.modules
/usr/lib/python3/dist-packages/numpydoc/docscrape.py:421: UserWarning: Unknown section Input Parameters: in the docstring of IClampMod in /build/reproducible-path/bmtk-1.1.1+ds/bmtk/simulator/core/modules/iclamp.py.
self[section] = content
reading sources... [ 23%] bmtk/bmtk.simulator.core.sonata_reader
reading sources... [ 25%] bmtk/bmtk.simulator.filternet
reading sources... [ 26%] bmtk/bmtk.simulator.filternet.default_setters
reading sources... [ 27%] bmtk/bmtk.simulator.filternet.lgnmodel
reading sources... [ 28%] bmtk/bmtk.simulator.filternet.modules
reading sources... [ 30%] bmtk/bmtk.simulator.pointnet
reading sources... [ 31%] bmtk/bmtk.simulator.pointnet.default_setters
reading sources... [ 32%] bmtk/bmtk.simulator.pointnet.modules
reading sources... [ 33%] bmtk/bmtk.simulator.popnet
reading sources... [ 35%] bmtk/bmtk.simulator.utils
reading sources... [ 36%] bmtk/bmtk.tests
reading sources... [ 37%] bmtk/bmtk.tests.builder
reading sources... [ 38%] bmtk/bmtk.tests.builder.auxi
reading sources... [ 40%] bmtk/bmtk.tests.builder.bionet
reading sources... [ 41%] bmtk/bmtk.tests.simulator
reading sources... [ 42%] bmtk/bmtk.tests.simulator.bionet
reading sources... [ 43%] bmtk/bmtk.tests.simulator.pointnet
reading sources... [ 44%] bmtk/bmtk.tests.simulator.popnet
reading sources... [ 46%] bmtk/bmtk.tests.utils
reading sources... [ 47%] bmtk/bmtk.tests.utils.reports
reading sources... [ 48%] bmtk/bmtk.tests.utils.reports.compartment
reading sources... [ 49%] bmtk/bmtk.tests.utils.reports.spike_trains
reading sources... [ 51%] bmtk/bmtk.tests.utils.sonata
reading sources... [ 52%] bmtk/bmtk.utils
reading sources... [ 53%] bmtk/bmtk.utils.cell_types_db
reading sources... [ 54%] bmtk/bmtk.utils.compile_mechanisms
reading sources... [ 56%] bmtk/bmtk.utils.create_environment
reading sources... [ 57%] bmtk/bmtk.utils.io
reading sources... [ 58%] bmtk/bmtk.utils.reports
reading sources... [ 59%] bmtk/bmtk.utils.reports.compartment
reading sources... [ 60%] bmtk/bmtk.utils.reports.spike_trains
reading sources... [ 62%] bmtk/bmtk.utils.sonata
reading sources... [ 63%] bmtk/bmtk.utils.sonata.config
reading sources... [ 64%] bmtk/modules
reading sources... [ 65%] builder
reading sources... [ 67%] contributors
reading sources... [ 68%] current_clamps
reading sources... [ 69%] ecephys_probe
reading sources... [ 70%] examples
reading sources... [ 72%] filternet
reading sources... [ 73%] how_to_cite
reading sources... [ 74%] index
reading sources... [ 75%] installation
reading sources... [ 77%] network_file_formats
reading sources... [ 78%] pointnet
reading sources... [ 79%] popnet
reading sources... [ 80%] registration
reading sources... [ 81%] simulators
reading sources... [ 83%] tutorial_NetworkBuilder_Intro
reading sources... [ 84%] tutorial_auditory_filternet
reading sources... [ 85%] tutorial_bionet_disconnected_sims
reading sources... [ 86%] tutorial_cell_placement
reading sources... [ 88%] tutorial_dynamic_synapses
reading sources... [ 89%] tutorial_filter_models
reading sources... [ 90%] tutorial_multi_pop
reading sources... [ 91%] tutorial_pointnet_modeling
reading sources... [ 93%] tutorial_population_modeling
reading sources... [ 94%] tutorial_single_cell_clamped
reading sources... [ 95%] tutorial_single_cell_syn
reading sources... [ 96%] tutorial_single_pop
reading sources... [ 98%] tutorial_spike_trains_refractory
reading sources... [ 99%] tutorials
reading sources... [100%] workshop
/build/reproducible-path/bmtk-1.1.1+ds/docs/autodocs/source/bionet.rst:2: WARNING: Duplicate explicit target name: "documentation". [docutils]
/build/reproducible-path/bmtk-1.1.1+ds/bmtk/simulator/bionet/default_setters/cell_models.py:docstring of bmtk.simulator.bionet.default_setters.cell_models.loadHOC:2: WARNING: Inline emphasis start-string without end-string. [docutils]
/build/reproducible-path/bmtk-1.1.1+ds/bmtk/simulator/bionet/modules/comsol.py:docstring of bmtk.simulator.bionet.modules.comsol.ComsolMod.initialize:4: ERROR: Unexpected indentation. [docutils]
/build/reproducible-path/bmtk-1.1.1+ds/bmtk/simulator/bionet/modules/comsol.py:docstring of bmtk.simulator.bionet.modules.comsol.ComsolMod.initialize:7: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils]
/build/reproducible-path/bmtk-1.1.1+ds/bmtk/simulator/bionet/modules/comsol.py:docstring of bmtk.simulator.bionet.modules.comsol.ComsolMod.initialize:11: ERROR: Unexpected indentation. [docutils]
/build/reproducible-path/bmtk-1.1.1+ds/bmtk/simulator/bionet/modules/comsol.py:docstring of bmtk.simulator.bionet.modules.comsol.ComsolMod.step:4: ERROR: Unexpected indentation. [docutils]
/build/reproducible-path/bmtk-1.1.1+ds/bmtk/simulator/bionet/modules/comsol.py:docstring of bmtk.simulator.bionet.modules.comsol.ComsolMod.step:10: ERROR: Unexpected indentation. [docutils]
No module named 'dipde' [autodoc.import_object]
No module named 'dipde' [autodoc.import_object]
No module named 'dipde' [autodoc.import_object]
No module named 'dipde' [autodoc.import_object]
No module named 'dipde' [autodoc.import_object]
No module named 'dipde' [autodoc.import_object]
No module named 'memory_profiler' [autodoc.import_object]
/build/reproducible-path/bmtk-1.1.1+ds/docs/autodocs/source/how_to_cite.rst:32: WARNING: Line block ends without a blank line. [docutils]
/build/reproducible-path/bmtk-1.1.1+ds/docs/autodocs/source/index.rst:8: WARNING: Duplicate explicit target name: "link". [docutils]
/build/reproducible-path/bmtk-1.1.1+ds/docs/autodocs/source/installation.rst:2: WARNING: Duplicate explicit target name: "here". [docutils]
/build/reproducible-path/bmtk-1.1.1+ds/docs/autodocs/source/pointnet.rst:2: WARNING: Duplicate explicit target name: "documentation". [docutils]
looking for now-outdated files... none found
pickling environment... done
checking consistency... /build/reproducible-path/bmtk-1.1.1+ds/docs/autodocs/source/bmtk/modules.rst: WARNING: document isn't included in any toctree
/build/reproducible-path/bmtk-1.1.1+ds/docs/autodocs/source/bmtk/bmtk.rst: document is referenced in multiple toctrees: ['bmtk/modules', 'index'], selecting: index <- bmtk/bmtk
done
preparing documents... done
copying assets...
copying downloadable files... [100%] ../../_static/2022-07-Allen-Institute-Software-Modeling-Workshop.pdf
copying static files...
Writing evaluated template result to /build/reproducible-path/bmtk-1.1.1+ds/build/html/_static/documentation_options.js
Writing evaluated template result to /build/reproducible-path/bmtk-1.1.1+ds/build/html/_static/basic.css
Writing evaluated template result to /build/reproducible-path/bmtk-1.1.1+ds/build/html/_static/language_data.js
Writing evaluated template result to /build/reproducible-path/bmtk-1.1.1+ds/build/html/_static/aibs_sphinx.css
Writing evaluated template result to /build/reproducible-path/bmtk-1.1.1+ds/build/html/_static/aibs_sphinx.css
copying static files: done
copying extra files...
copying extra files: done
copying assets: done
writing output... [ 1%] ad_tutorials
writing output... [ 2%] analyzer
writing output... [ 4%] bionet
writing output... [ 5%] bionet_config
writing output... [ 6%] bionet_tutorial
writing output... [ 7%] bmtk/bmtk
writing output... [ 9%] bmtk/bmtk.analyzer
writing output... [ 10%] bmtk/bmtk.builder
writing output... [ 11%] bmtk/bmtk.builder.auxi
writing output... [ 12%] bmtk/bmtk.builder.bionet
writing output... [ 14%] bmtk/bmtk.builder.edges_sorter
writing output... [ 15%] bmtk/bmtk.builder.network_adaptors
writing output... [ 16%] bmtk/bmtk.simulator
writing output... [ 17%] bmtk/bmtk.simulator.bionet
writing output... [ 19%] bmtk/bmtk.simulator.bionet.default_setters
writing output... [ 20%] bmtk/bmtk.simulator.bionet.modules
writing output... [ 21%] bmtk/bmtk.simulator.core
writing output... [ 22%] bmtk/bmtk.simulator.core.modules
writing output... [ 23%] bmtk/bmtk.simulator.core.sonata_reader
writing output... [ 25%] bmtk/bmtk.simulator.filternet
writing output... [ 26%] bmtk/bmtk.simulator.filternet.default_setters
writing output... [ 27%] bmtk/bmtk.simulator.filternet.lgnmodel
writing output... [ 28%] bmtk/bmtk.simulator.filternet.modules
writing output... [ 30%] bmtk/bmtk.simulator.pointnet
writing output... [ 31%] bmtk/bmtk.simulator.pointnet.default_setters
writing output... [ 32%] bmtk/bmtk.simulator.pointnet.modules
writing output... [ 33%] bmtk/bmtk.simulator.popnet
writing output... [ 35%] bmtk/bmtk.simulator.utils
writing output... [ 36%] bmtk/bmtk.tests
writing output... [ 37%] bmtk/bmtk.tests.builder
writing output... [ 38%] bmtk/bmtk.tests.builder.auxi
writing output... [ 40%] bmtk/bmtk.tests.builder.bionet
writing output... [ 41%] bmtk/bmtk.tests.simulator
writing output... [ 42%] bmtk/bmtk.tests.simulator.bionet
writing output... [ 43%] bmtk/bmtk.tests.simulator.pointnet
writing output... [ 44%] bmtk/bmtk.tests.simulator.popnet
writing output... [ 46%] bmtk/bmtk.tests.utils
writing output... [ 47%] bmtk/bmtk.tests.utils.reports
writing output... [ 48%] bmtk/bmtk.tests.utils.reports.compartment
writing output... [ 49%] bmtk/bmtk.tests.utils.reports.spike_trains
writing output... [ 51%] bmtk/bmtk.tests.utils.sonata
writing output... [ 52%] bmtk/bmtk.utils
writing output... [ 53%] bmtk/bmtk.utils.cell_types_db
writing output... [ 54%] bmtk/bmtk.utils.compile_mechanisms
writing output... [ 56%] bmtk/bmtk.utils.create_environment
writing output... [ 57%] bmtk/bmtk.utils.io
writing output... [ 58%] bmtk/bmtk.utils.reports
writing output... [ 59%] bmtk/bmtk.utils.reports.compartment
writing output... [ 60%] bmtk/bmtk.utils.reports.spike_trains
writing output... [ 62%] bmtk/bmtk.utils.sonata
writing output... [ 63%] bmtk/bmtk.utils.sonata.config
writing output... [ 64%] bmtk/modules
writing output... [ 65%] builder
writing output... [ 67%] contributors
writing output... [ 68%] current_clamps
writing output... [ 69%] ecephys_probe
writing output... [ 70%] examples
writing output... [ 72%] filternet
writing output... [ 73%] how_to_cite
writing output... [ 74%] index
writing output... [ 75%] installation
writing output... [ 77%] network_file_formats
writing output... [ 78%] pointnet
writing output... [ 79%] popnet
writing output... [ 80%] registration
writing output... [ 81%] simulators
writing output... [ 83%] tutorial_NetworkBuilder_Intro
writing output... [ 84%] tutorial_auditory_filternet
writing output... [ 85%] tutorial_bionet_disconnected_sims
writing output... [ 86%] tutorial_cell_placement
writing output... [ 88%] tutorial_dynamic_synapses
writing output... [ 89%] tutorial_filter_models
writing output... [ 90%] tutorial_multi_pop
writing output... [ 91%] tutorial_pointnet_modeling
writing output... [ 93%] tutorial_population_modeling
writing output... [ 94%] tutorial_single_cell_clamped
writing output... [ 95%] tutorial_single_cell_syn
writing output... [ 96%] tutorial_single_pop
writing output... [ 98%] tutorial_spike_trains_refractory
writing output... [ 99%] tutorials
writing output... [100%] workshop
/build/reproducible-path/bmtk-1.1.1+ds/docs/autodocs/source/tutorial_bionet_disconnected_sims.ipynb:923: WARNING: Lexing literal_block '{\n "inputs": {\n "replay_edges_1": {\n "input_type": "replay_spikes",\n "module": "replay",\n ...\n }\n "replay_edges_2": {\n "input_type": "replay_spikes",\n "module": "replay",\n ...\n }\n }\n}' as "json" resulted in an error at token: '.'. Retrying in relaxed mode. [misc.highlighting_failure]
generating indices... genindex py-modindex done
copying linked files...
copying notebooks ... [ 8%] tutorial_NetworkBuilder_Intro.ipynb
copying notebooks ... [ 15%] tutorial_auditory_filternet.ipynb
copying notebooks ... [ 23%] tutorial_bionet_disconnected_sims.ipynb
copying notebooks ... [ 31%] tutorial_cell_placement.ipynb
copying notebooks ... [ 38%] tutorial_dynamic_synapses.ipynb
copying notebooks ... [ 46%] tutorial_filter_models.ipynb
copying notebooks ... [ 54%] tutorial_multi_pop.ipynb
copying notebooks ... [ 62%] tutorial_pointnet_modeling.ipynb
copying notebooks ... [ 69%] tutorial_population_modeling.ipynb
copying notebooks ... [ 77%] tutorial_single_cell_clamped.ipynb
copying notebooks ... [ 85%] tutorial_single_cell_syn.ipynb
copying notebooks ... [ 92%] tutorial_single_pop.ipynb
copying notebooks ... [100%] tutorial_spike_trains_refractory.ipynb
highlighting module code... [ 0%] bmtk.analyzer
highlighting module code... [ 1%] bmtk.analyzer.compartment
highlighting module code... [ 1%] bmtk.analyzer.ecp
highlighting module code... [ 2%] bmtk.analyzer.firing_rates
highlighting module code... [ 2%] bmtk.analyzer.io_tools
highlighting module code... [ 3%] bmtk.analyzer.spike_trains
highlighting module code... [ 3%] bmtk.analyzer.spikes_analyzer
highlighting module code... [ 4%] bmtk.analyzer.spikes_loader
highlighting module code... [ 4%] bmtk.analyzer.utils
highlighting module code... [ 4%] bmtk.builder.auxi.edge_connectors
highlighting module code... [ 5%] bmtk.builder.auxi.node_params
highlighting module code... [ 5%] bmtk.builder.bionet
highlighting module code... [ 6%] bmtk.builder.bionet.swc_reader
highlighting module code... [ 6%] bmtk.builder.builder_utils
highlighting module code... [ 7%] bmtk.builder.connection_map
highlighting module code... [ 7%] bmtk.builder.connector
highlighting module code... [ 8%] bmtk.builder.edge
highlighting module code... [ 8%] bmtk.builder.edges_sorter
highlighting module code... [ 8%] bmtk.builder.edges_sorter.memory_sorter
highlighting module code... [ 9%] bmtk.builder.edges_sorter.merge_sorter
highlighting module code... [ 9%] bmtk.builder.functor_cache
highlighting module code... [ 10%] bmtk.builder.id_generator
highlighting module code... [ 10%] bmtk.builder.index_builders
highlighting module code... [ 11%] bmtk.builder.iterator
highlighting module code... [ 11%] bmtk.builder.network_adaptors.dm_network
highlighting module code... [ 12%] bmtk.builder.network_adaptors.dm_network_orig
highlighting module code... [ 12%] bmtk.builder.network_adaptors.edge_props_table
highlighting module code... [ 12%] bmtk.builder.network_adaptors.edges_collator
highlighting module code... [ 13%] bmtk.builder.network_adaptors.network
highlighting module code... [ 13%] bmtk.builder.network_adaptors.nxnetwork
highlighting module code... [ 14%] bmtk.builder.network_builder
highlighting module code... [ 14%] bmtk.builder.node
highlighting module code... [ 15%] bmtk.builder.node_pool
highlighting module code... [ 15%] bmtk.builder.node_set
highlighting module code... [ 16%] bmtk.simulator.bionet.biocell
highlighting module code... [ 16%] bmtk.simulator.bionet.bionetwork
highlighting module code... [ 17%] bmtk.simulator.bionet.biosimulator
highlighting module code... [ 17%] bmtk.simulator.bionet.cell
highlighting module code... [ 17%] bmtk.simulator.bionet.config
highlighting module code... [ 18%] bmtk.simulator.bionet.default_setters.cell_models
highlighting module code... [ 18%] bmtk.simulator.bionet.default_setters.synapse_models
highlighting module code... [ 19%] bmtk.simulator.bionet.default_setters.synaptic_weights
highlighting module code... [ 19%] bmtk.simulator.bionet.gids
highlighting module code... [ 20%] bmtk.simulator.bionet.iclamp
highlighting module code... [ 20%] bmtk.simulator.bionet.io_tools
highlighting module code... [ 21%] bmtk.simulator.bionet.modules.comsol
highlighting module code... [ 21%] bmtk.simulator.bionet.modules.ecephys_module
highlighting module code... [ 21%] bmtk.simulator.bionet.modules.ecp
highlighting module code... [ 22%] bmtk.simulator.bionet.modules.iclamp
highlighting module code... [ 22%] bmtk.simulator.bionet.modules.record_cellvars
highlighting module code... [ 23%] bmtk.simulator.bionet.modules.record_clamp
highlighting module code... [ 23%] bmtk.simulator.bionet.modules.record_netcons
highlighting module code... [ 24%] bmtk.simulator.bionet.modules.record_spikes
highlighting module code... [ 24%] bmtk.simulator.bionet.modules.save_synapses
highlighting module code... [ 25%] bmtk.simulator.bionet.modules.seclamp
highlighting module code... [ 25%] bmtk.simulator.bionet.modules.sim_module
highlighting module code... [ 25%] bmtk.simulator.bionet.modules.xstim
highlighting module code... [ 26%] bmtk.simulator.bionet.modules.xstim_waveforms
highlighting module code... [ 26%] bmtk.simulator.bionet.morphology
highlighting module code... [ 27%] bmtk.simulator.bionet.nml_reader
highlighting module code... [ 27%] bmtk.simulator.bionet.nrn
highlighting module code... [ 28%] bmtk.simulator.bionet.pointprocesscell
highlighting module code... [ 28%] bmtk.simulator.bionet.pointsomacell
highlighting module code... [ 29%] bmtk.simulator.bionet.seclamp
highlighting module code... [ 29%] bmtk.simulator.bionet.sonata_adaptors
highlighting module code... [ 29%] bmtk.simulator.bionet.utils
highlighting module code... [ 30%] bmtk.simulator.bionet.virtualcell
highlighting module code... [ 30%] bmtk.simulator.core.edge_population
highlighting module code... [ 31%] bmtk.simulator.core.graph
highlighting module code... [ 31%] bmtk.simulator.core.io_tools
highlighting module code... [ 32%] bmtk.simulator.core.modules.ecephys_module
highlighting module code... [ 32%] bmtk.simulator.core.modules.iclamp
highlighting module code... [ 33%] bmtk.simulator.core.modules.simulator_module
highlighting module code... [ 33%] bmtk.simulator.core.network_reader
highlighting module code... [ 33%] bmtk.simulator.core.node_population
highlighting module code... [ 34%] bmtk.simulator.core.node_sets
highlighting module code... [ 34%] bmtk.simulator.core.pyfunction_cache
highlighting module code... [ 35%] bmtk.simulator.core.simulation_config
highlighting module code... [ 35%] bmtk.simulator.core.simulation_config_validator
highlighting module code... [ 36%] bmtk.simulator.core.simulator
highlighting module code... [ 36%] bmtk.simulator.core.simulator_network
highlighting module code... [ 37%] bmtk.simulator.core.sonata_reader.edge_adaptor
highlighting module code... [ 37%] bmtk.simulator.core.sonata_reader.network_reader
highlighting module code... [ 38%] bmtk.simulator.core.sonata_reader.node_adaptor
highlighting module code... [ 38%] bmtk.simulator.filternet.auditory_processing
highlighting module code... [ 38%] bmtk.simulator.filternet.cell
highlighting module code... [ 39%] bmtk.simulator.filternet.config
highlighting module code... [ 39%] bmtk.simulator.filternet.default_setters.cell_loaders
highlighting module code... [ 40%] bmtk.simulator.filternet.filternetwork
highlighting module code... [ 40%] bmtk.simulator.filternet.filtersimulator
highlighting module code... [ 41%] bmtk.simulator.filternet.io_tools
highlighting module code... [ 41%] bmtk.simulator.filternet.lgnmodel.cellmetrics
highlighting module code... [ 42%] bmtk.simulator.filternet.lgnmodel.cellmodel
highlighting module code... [ 42%] bmtk.simulator.filternet.lgnmodel.cursor
highlighting module code... [ 42%] bmtk.simulator.filternet.lgnmodel.fitfuns
highlighting module code... [ 43%] bmtk.simulator.filternet.lgnmodel.gaborfilter
highlighting module code... [ 43%] bmtk.simulator.filternet.lgnmodel.kernel
highlighting module code... [ 44%] bmtk.simulator.filternet.lgnmodel.lattice_unit_constructor
highlighting module code... [ 44%] bmtk.simulator.filternet.lgnmodel.lgnmodel1
highlighting module code... [ 45%] bmtk.simulator.filternet.lgnmodel.linearfilter
highlighting module code... [ 45%] bmtk.simulator.filternet.lgnmodel.lnunit
highlighting module code... [ 46%] bmtk.simulator.filternet.lgnmodel.make_cell_list
highlighting module code... [ 46%] bmtk.simulator.filternet.lgnmodel.movie
highlighting module code... [ 46%] bmtk.simulator.filternet.lgnmodel.poissongeneration
highlighting module code... [ 47%] bmtk.simulator.filternet.lgnmodel.spatialfilter
highlighting module code... [ 47%] bmtk.simulator.filternet.lgnmodel.temporalfilter
highlighting module code... [ 48%] bmtk.simulator.filternet.lgnmodel.transferfunction
highlighting module code... [ 48%] bmtk.simulator.filternet.lgnmodel.util_fns
highlighting module code... [ 49%] bmtk.simulator.filternet.lgnmodel.utilities
highlighting module code... [ 49%] bmtk.simulator.filternet.lgnmodel.waveletfilter
highlighting module code... [ 50%] bmtk.simulator.filternet.modules.base
highlighting module code... [ 50%] bmtk.simulator.filternet.modules.create_spikes
highlighting module code... [ 50%] bmtk.simulator.filternet.modules.record_rates
highlighting module code... [ 51%] bmtk.simulator.filternet.pyfunction_cache
highlighting module code... [ 51%] bmtk.simulator.filternet.sonata_adaptors
highlighting module code... [ 52%] bmtk.simulator.pointnet.config
highlighting module code... [ 52%] bmtk.simulator.pointnet.default_setters.cell_models
highlighting module code... [ 53%] bmtk.simulator.pointnet.default_setters.synapse_models
highlighting module code... [ 53%] bmtk.simulator.pointnet.default_setters.synaptic_weights
highlighting module code... [ 54%] bmtk.simulator.pointnet.gids
highlighting module code... [ 54%] bmtk.simulator.pointnet.glif_utils
highlighting module code... [ 54%] bmtk.simulator.pointnet.io_tools
highlighting module code... [ 55%] bmtk.simulator.pointnet.modules.ecephys_module
highlighting module code... [ 55%] bmtk.simulator.pointnet.modules.iclamp
highlighting module code... [ 56%] bmtk.simulator.pointnet.modules.multimeter_reporter
highlighting module code... [ 56%] bmtk.simulator.pointnet.modules.record_spikes
highlighting module code... [ 57%] bmtk.simulator.pointnet.modules.sim_module
highlighting module code... [ 57%] bmtk.simulator.pointnet.modules.spikes_inputs
highlighting module code... [ 58%] bmtk.simulator.pointnet.modules.weight_recorder
highlighting module code... [ 58%] bmtk.simulator.pointnet.nest_utils
highlighting module code... [ 58%] bmtk.simulator.pointnet.pointnetwork
highlighting module code... [ 59%] bmtk.simulator.pointnet.pointsimulator
highlighting module code... [ 59%] bmtk.simulator.pointnet.property_map
highlighting module code... [ 60%] bmtk.simulator.pointnet.sonata_adaptors
highlighting module code... [ 60%] bmtk.simulator.pointnet.utils
highlighting module code... [ 61%] bmtk.simulator.popnet.sonata_adaptors
highlighting module code... [ 61%] bmtk.simulator.popnet.utils
highlighting module code... [ 62%] bmtk.simulator.utils.simulation_inputs
highlighting module code... [ 62%] bmtk.simulator.utils.simulation_reports
highlighting module code... [ 62%] bmtk.tests.builder.auxi.test_edge_connectors
highlighting module code... [ 63%] bmtk.tests.builder.auxi.test_node_params
highlighting module code... [ 63%] bmtk.tests.builder.bionet.test_swc_reader
highlighting module code... [ 64%] bmtk.tests.builder.test_connection_map
highlighting module code... [ 64%] bmtk.tests.builder.test_connector
highlighting module code... [ 65%] bmtk.tests.builder.test_densenetwork
highlighting module code... [ 65%] bmtk.tests.builder.test_edge_iterator
highlighting module code... [ 66%] bmtk.tests.builder.test_edges_sorter
highlighting module code... [ 66%] bmtk.tests.builder.test_id_generator
highlighting module code... [ 67%] bmtk.tests.builder.test_index_builders
highlighting module code... [ 67%] bmtk.tests.builder.test_iterator
highlighting module code... [ 67%] bmtk.tests.builder.test_network
highlighting module code... [ 68%] bmtk.tests.builder.test_network_mpi
highlighting module code... [ 68%] bmtk.tests.builder.test_node_pool
highlighting module code... [ 69%] bmtk.tests.builder.test_node_set
highlighting module code... [ 69%] bmtk.tests.builder.test_save_network
highlighting module code... [ 70%] bmtk.tests.simulator.bionet.bionet_virtual_files
highlighting module code... [ 70%] bmtk.tests.simulator.bionet.set_cell_params
highlighting module code... [ 71%] bmtk.tests.simulator.bionet.set_syn_params
highlighting module code... [ 71%] bmtk.tests.simulator.bionet.set_weights
highlighting module code... [ 71%] bmtk.tests.simulator.bionet.test_biograph
highlighting module code... [ 72%] bmtk.tests.simulator.bionet.test_gids
highlighting module code... [ 72%] bmtk.tests.simulator.bionet.test_iclamp
highlighting module code... [ 73%] bmtk.tests.simulator.bionet.test_morphology
highlighting module code... [ 73%] bmtk.tests.simulator.bionet.test_nrn
highlighting module code... [ 74%] bmtk.tests.simulator.bionet.test_virtualcell
highlighting module code... [ 74%] bmtk.tests.simulator.pointnet.conftest
highlighting module code... [ 75%] bmtk.tests.simulator.pointnet.pointnet_virtual_files
highlighting module code... [ 75%] bmtk.tests.simulator.pointnet.test_glif_utils
highlighting module code... [ 75%] bmtk.tests.simulator.pointnet.test_multimeter_report
highlighting module code... [ 76%] bmtk.tests.simulator.pointnet.test_pointgraph
highlighting module code... [ 76%] bmtk.tests.simulator.pointnet.test_pointnetwork
highlighting module code... [ 77%] bmtk.tests.simulator.popnet.popnet_virtual_files
highlighting module code... [ 77%] bmtk.tests.simulator.popnet.test_popgraph
highlighting module code... [ 78%] bmtk.tests.utils.reports.compartment.test_compartment_reader
highlighting module code... [ 78%] bmtk.tests.utils.reports.compartment.test_compartment_writer
highlighting module code... [ 79%] bmtk.tests.utils.reports.compartment.test_plotting
highlighting module code... [ 79%] bmtk.tests.utils.reports.spike_trains.test_csv_adaptor
highlighting module code... [ 79%] bmtk.tests.utils.reports.spike_trains.test_csv_adaptor_mpi
highlighting module code... [ 80%] bmtk.tests.utils.reports.spike_trains.test_plotting
highlighting module code... [ 80%] bmtk.tests.utils.reports.spike_trains.test_sonata_adaptor
highlighting module code... [ 81%] bmtk.tests.utils.reports.spike_trains.test_sonata_adaptor_mpi
highlighting module code... [ 81%] bmtk.tests.utils.reports.spike_trains.test_spikes_buffer
highlighting module code... [ 82%] bmtk.tests.utils.reports.spike_trains.test_spikes_buffer_mpi
highlighting module code... [ 82%] bmtk.tests.utils.reports.spike_trains.test_spikes_core
highlighting module code... [ 83%] bmtk.tests.utils.sonata.test_config
highlighting module code... [ 83%] bmtk.tests.utils.sonata.test_config_validator
highlighting module code... [ 83%] bmtk.tests.utils.sonata.test_edge_stats
highlighting module code... [ 84%] bmtk.utils.cell_types_db
highlighting module code... [ 84%] bmtk.utils.compile_mechanisms.compile_mechanisms
highlighting module code... [ 85%] bmtk.utils.create_environment.create_environment
highlighting module code... [ 85%] bmtk.utils.create_environment.env_builder
highlighting module code... [ 86%] bmtk.utils.hdf5_helper
highlighting module code... [ 86%] bmtk.utils.io
highlighting module code... [ 87%] bmtk.utils.io.cell_vars
highlighting module code... [ 87%] bmtk.utils.io.firing_rates
highlighting module code... [ 88%] bmtk.utils.io.ioutils
highlighting module code... [ 88%] bmtk.utils.io.spike_trains
highlighting module code... [ 88%] bmtk.utils.lazy_property
highlighting module code... [ 89%] bmtk.utils.reports.compartment.compartment_reader
highlighting module code... [ 89%] bmtk.utils.reports.compartment.compartment_report
highlighting module code... [ 90%] bmtk.utils.reports.compartment.compartment_writer
highlighting module code... [ 90%] bmtk.utils.reports.compartment.core
highlighting module code... [ 91%] bmtk.utils.reports.compartment.plotting
highlighting module code... [ 91%] bmtk.utils.reports.current_writer
highlighting module code... [ 92%] bmtk.utils.reports.spike_trains.core
highlighting module code... [ 92%] bmtk.utils.reports.spike_trains.plotting
highlighting module code... [ 92%] bmtk.utils.reports.spike_trains.spike_train_buffer
highlighting module code... [ 93%] bmtk.utils.reports.spike_trains.spike_train_readers
highlighting module code... [ 93%] bmtk.utils.reports.spike_trains.spike_trains
highlighting module code... [ 94%] bmtk.utils.reports.spike_trains.spike_trains_api
highlighting module code... [ 94%] bmtk.utils.reports.spike_trains.spikes_file_writers
highlighting module code... [ 95%] bmtk.utils.reports.spike_trains.stats
highlighting module code... [ 95%] bmtk.utils.sim_setup
highlighting module code... [ 96%] bmtk.utils.sonata.column_property
highlighting module code... [ 96%] bmtk.utils.sonata.config.sonata_config
highlighting module code... [ 96%] bmtk.utils.sonata.edge
highlighting module code... [ 97%] bmtk.utils.sonata.edge_stats
highlighting module code... [ 97%] bmtk.utils.sonata.file
highlighting module code... [ 98%] bmtk.utils.sonata.file_root
highlighting module code... [ 98%] bmtk.utils.sonata.group
highlighting module code... [ 99%] bmtk.utils.sonata.node
highlighting module code... [ 99%] bmtk.utils.sonata.population
highlighting module code... [100%] bmtk.utils.sonata.types_table
highlighting module code... [100%] bmtk.utils.sonata.utils
writing additional pages... search done
copying images... [ 1%] _static/images/bmtk_architecture_analyzer_highlight.jpg
copying images... [ 2%] _static/images/spikes_report.png
copying images... [ 3%] _static/images/cell_reports.png
copying images... [ 4%] _static/images/segmentation_indexing.jpg
copying images... [ 5%] _static/images/bmtk_architecture_bionet_highlight.jpg
copying images... [ 6%] _static/images/disconnected_normal_sims.png
copying images... [ 7%] _static/images/disconnected_recurrent_only.png
copying images... [ 8%] _static/images/disconnected_scnn1a.png
copying images... [ 9%] _static/images/all_network_cropped.png
copying images... [ 10%] _static/images/ext_inputs_raster.png
copying images... [ 11%] _static/images/v1_raster.png
copying images... [ 12%] _static/images/bmtk_architecture_builder_highlight.jpg
copying images... [ 12%] _static/images/builder_add_nodes.jpg
copying images... [ 13%] _static/images/builder_add_edges.jpg
copying images... [ 14%] _static/images/builder_complete_network.jpg
copying images... [ 15%] _static/images/sonata_structure.jpg
copying images... [ 16%] _static/images/iclamp_stim_single.png
copying images... [ 17%] _static/images/iclamp_stim_multiple.png
copying images... [ 18%] _static/images/ctdb_sweep_selection.png
copying images... [ 19%] _static/images/ecephys_probe_intervals.png
copying images... [ 20%] _static/images/bmtk_architecture_filternet_highlight.jpg
copying images... [ 21%] _static/images/lnp_model.jpg
copying images... [ 22%] _static/images/levels_of_resolution_noml.png
copying images... [ 23%] _static/images/bmtk_workflow.jpg
copying images... [ 24%] _static/images/bmtk_architecture.jpg
copying images... [ 25%] _static/images/graph_structure.png
copying images... [ 26%] _static/images/nodes_h5_structure.png
copying images... [ 27%] _static/images/node_types.png
copying images... [ 28%] _static/images/edges_h5_structure.png
copying images... [ 29%] _static/images/edge_types.png
copying images... [ 30%] _static/images/bmtk_architecture_pointnet_highlight.jpg
copying images... [ 31%] _static/images/bmtk_architecture_popnet_highlight.jpg
copying images... [ 32%] _static/images/bmtk_architecture_simulator_highlight.jpg
copying images... [ 33%] _static/images/brunel_comparisons.jpg
copying images... [ 34%] _static/images/bmtk_sim_env.png
copying images... [ 35%] ../../../build/html/.doctrees/nbsphinx/tutorial_auditory_filternet_2_1.png
copying images... [ 36%] ../../../build/html/.doctrees/nbsphinx/tutorial_auditory_filternet_2_2.png
copying images... [ 37%] _static/_tutorial_images/Filters_sp_t_mod.png
copying images... [ 38%] _static/_tutorial_images/Responses_to_diff_scales_and_orientations.png
copying images... [ 38%] ../../../build/html/.doctrees/nbsphinx/tutorial_auditory_filternet_7_1.png
copying images... [ 39%] ../../../build/html/.doctrees/nbsphinx/tutorial_auditory_filternet_7_2.png
copying images... [ 40%] _static/_tutorial_images/disconnected_sim_figure.png
copying images... [ 41%] ../../../build/html/.doctrees/nbsphinx/tutorial_bionet_disconnected_sims_4_0.png
copying images... [ 42%] ../../../build/html/.doctrees/nbsphinx/tutorial_bionet_disconnected_sims_7_0.png
copying images... [ 43%] ../../../build/html/.doctrees/nbsphinx/tutorial_bionet_disconnected_sims_11_0.png
copying images... [ 44%] ../../../build/html/.doctrees/nbsphinx/tutorial_bionet_disconnected_sims_14_0.png
copying images... [ 45%] ../../../build/html/.doctrees/nbsphinx/tutorial_bionet_disconnected_sims_17_0.png
copying images... [ 46%] ../../../build/html/.doctrees/nbsphinx/tutorial_bionet_disconnected_sims_20_0.png
copying images... [ 47%] ../../../build/html/.doctrees/nbsphinx/tutorial_cell_placement_2_0.png
copying images... [ 48%] ../../../build/html/.doctrees/nbsphinx/tutorial_cell_placement_4_0.png
copying images... [ 49%] ../../../build/html/.doctrees/nbsphinx/tutorial_cell_placement_6_0.png
copying images... [ 50%] ../../../build/html/.doctrees/nbsphinx/tutorial_cell_placement_8_0.png
copying images... [ 51%] ../../../build/html/.doctrees/nbsphinx/tutorial_cell_placement_10_1.png
copying images... [ 52%] ../../../build/html/.doctrees/nbsphinx/tutorial_cell_placement_11_1.png
copying images... [ 53%] ../../../build/html/.doctrees/nbsphinx/tutorial_cell_placement_14_1.png
copying images... [ 54%] ../../../build/html/.doctrees/nbsphinx/tutorial_cell_placement_16_1.png
copying images... [ 55%] ../../../build/html/.doctrees/nbsphinx/tutorial_cell_placement_18_1.png
copying images... [ 56%] ../../../build/html/.doctrees/nbsphinx/tutorial_cell_placement_20_1.png
copying images... [ 57%] ../../../build/html/.doctrees/nbsphinx/tutorial_cell_placement_21_1.png
copying images... [ 58%] ../../../build/html/.doctrees/nbsphinx/tutorial_cell_placement_22_1.png
copying images... [ 59%] ../../../build/html/.doctrees/nbsphinx/tutorial_dynamic_synapses_8_0.png
copying images... [ 60%] ../../../build/html/.doctrees/nbsphinx/tutorial_dynamic_synapses_10_0.png
copying images... [ 61%] ../../../build/html/.doctrees/nbsphinx/tutorial_dynamic_synapses_18_0.png
copying images... [ 62%] ../../../build/html/.doctrees/nbsphinx/tutorial_dynamic_synapses_19_0.png
copying images... [ 62%] ../../../build/html/.doctrees/nbsphinx/tutorial_dynamic_synapses_26_0.png
copying images... [ 63%] ../../../build/html/.doctrees/nbsphinx/tutorial_dynamic_synapses_27_0.png
copying images... [ 64%] _static/_tutorial_images/bmtk_lnp.png
copying images... [ 65%] ../../../build/html/.doctrees/nbsphinx/tutorial_filter_models_9_0.png
copying images... [ 66%] _static/_tutorial_images/filternet_spat_filter.png
copying images... [ 67%] _static/_tutorial_images/filternet_temp_filter.png
copying images... [ 68%] _static/_tutorial_images/filternet_sfilt_params.png
copying images... [ 69%] _static/_tutorial_images/filternet_tfilt_params.png
copying images... [ 70%] ../../../build/html/.doctrees/nbsphinx/tutorial_multi_pop_26_0.png
copying images... [ 71%] ../../../build/html/.doctrees/nbsphinx/tutorial_multi_pop_26_1.png
copying images... [ 72%] ../../../build/html/.doctrees/nbsphinx/tutorial_multi_pop_28_0.png
copying images... [ 73%] ../../../build/html/.doctrees/nbsphinx/tutorial_multi_pop_28_1.png
copying images... [ 74%] ../../../build/html/.doctrees/nbsphinx/tutorial_multi_pop_30_0.png
copying images... [ 75%] ../../../build/html/.doctrees/nbsphinx/tutorial_pointnet_modeling_27_0.png
copying images... [ 76%] ../../../build/html/.doctrees/nbsphinx/tutorial_pointnet_modeling_29_0.png
copying images... [ 77%] ../../../build/html/.doctrees/nbsphinx/tutorial_pointnet_modeling_33_0.png
copying images... [ 78%] _static/_tutorial_images/raster_120cells_orig.png
copying images... [ 79%] _static/_tutorial_images/raster_120cells_perturbed.png
copying images... [ 80%] ../../../build/html/.doctrees/nbsphinx/tutorial_population_modeling_18_0.png
copying images... [ 81%] ../../../build/html/.doctrees/nbsphinx/tutorial_single_cell_clamped_16_0.png
copying images... [ 82%] ../../../build/html/.doctrees/nbsphinx/tutorial_single_cell_clamped_16_1.png
copying images... [ 83%] ../../../build/html/.doctrees/nbsphinx/tutorial_single_cell_syn_22_0.png
copying images... [ 84%] ../../../build/html/.doctrees/nbsphinx/tutorial_single_cell_syn_22_1.png
copying images... [ 85%] ../../../build/html/.doctrees/nbsphinx/tutorial_single_pop_19_0.png
copying images... [ 86%] ../../../build/html/.doctrees/nbsphinx/tutorial_single_pop_21_0.png
copying images... [ 87%] ../../../build/html/.doctrees/nbsphinx/tutorial_single_pop_21_1.png
copying images... [ 88%] ../../../build/html/.doctrees/nbsphinx/tutorial_single_pop_21_2.png
copying images... [ 88%] ../../../build/html/.doctrees/nbsphinx/tutorial_spike_trains_refractory_1_1.png
copying images... [ 89%] ../../../build/html/.doctrees/nbsphinx/tutorial_spike_trains_refractory_3_1.png
copying images... [ 90%] ../../../build/html/.doctrees/nbsphinx/tutorial_spike_trains_refractory_5_1.png
copying images... [ 91%] ../../../build/html/.doctrees/nbsphinx/tutorial_spike_trains_refractory_7_1.png
copying images... [ 92%] ../../../build/html/.doctrees/nbsphinx/tutorial_spike_trains_refractory_7_2.png
copying images... [ 93%] ../../../build/html/.doctrees/nbsphinx/tutorial_spike_trains_refractory_9_1.png
copying images... [ 94%] ../../../build/html/.doctrees/nbsphinx/tutorial_spike_trains_refractory_9_2.png
copying images... [ 95%] ../../../build/html/.doctrees/nbsphinx/tutorial_spike_trains_refractory_11_1.png
copying images... [ 96%] ../../../build/html/.doctrees/nbsphinx/tutorial_spike_trains_refractory_13_1.png
copying images... [ 97%] ../../../build/html/.doctrees/nbsphinx/tutorial_spike_trains_refractory_15_1.png
copying images... [ 98%] ../../../build/html/.doctrees/nbsphinx/tutorial_spike_trains_refractory_17_0.png
copying images... [ 99%] ../../../build/html/.doctrees/nbsphinx/tutorial_spike_trains_refractory_17_1.png
copying images... [100%] _static/images/modelingworkshopbanner.jpg
dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded, 28 warnings.
The HTML pages are in build/html.
make[1]: Leaving directory '/build/reproducible-path/bmtk-1.1.1+ds'
dh_auto_test -O--buildsystem=pybuild
I: pybuild pybuild:308: cp -r /build/reproducible-path/bmtk-1.1.1+ds/bmtk/tests /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/
I: pybuild base:311: cd /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build; python3.12 -m pytest
============================= test session starts ==============================
platform linux -- Python 3.12.8, pytest-8.3.4, pluggy-1.5.0
rootdir: /build/reproducible-path/bmtk-1.1.1+ds
plugins: typeguard-4.4.1
collected 361 items / 5 skipped
bmtk/tests/builder/auxi/test_edge_connectors.py .. [ 0%]
bmtk/tests/builder/auxi/test_node_params.py ......s [ 2%]
bmtk/tests/builder/test_connection_map.py ....... [ 4%]
bmtk/tests/builder/test_connector.py ..... [ 5%]
bmtk/tests/builder/test_densenetwork.py ... [ 6%]
bmtk/tests/builder/test_edge_iterator.py ... [ 7%]
bmtk/tests/builder/test_edges_sorter.py ... [ 8%]
bmtk/tests/builder/test_id_generator.py ...... [ 9%]
bmtk/tests/builder/test_index_builders.py .. [ 10%]
bmtk/tests/builder/test_iterator.py ........ [ 12%]
bmtk/tests/builder/test_network.py ............ [ 16%]
bmtk/tests/builder/test_network_mpi.py ssssssss [ 18%]
bmtk/tests/builder/test_node_pool.py ..... [ 19%]
bmtk/tests/builder/test_node_set.py ... [ 20%]
bmtk/tests/builder/test_save_network.py ...... [ 22%]
bmtk/tests/simulator/bionet/test_biograph.py ss [ 22%]
bmtk/tests/simulator/bionet/test_gids.py s [ 22%]
bmtk/tests/simulator/bionet/test_nrn.py sssssss [ 24%]
bmtk/tests/simulator/core/test_ecephys_module.py sssssss [ 26%]
bmtk/tests/simulator/core/test_iclamp.py ..... [ 28%]
bmtk/tests/simulator/core/test_io_tools.py .. [ 28%]
bmtk/tests/simulator/core/test_pyfunction_cache.py ...... [ 30%]
bmtk/tests/simulator/core/test_simulation_config.py .. [ 31%]
bmtk/tests/simulator/core/test_simulation_config_validator.py ... [ 31%]
bmtk/tests/simulator/filternet/lgnmodel/test_kernels.py ... [ 32%]
bmtk/tests/simulator/filternet/lgnmodel/test_movie.py ..... [ 34%]
bmtk/tests/simulator/filternet/lgnmodel/test_subclass_metrics.py ...... [ 35%]
bmtk/tests/simulator/filternet/lgnmodel/test_transferfunction.py . [ 36%]
bmtk/tests/simulator/filternet/lgnmodel/test_units.py .... [ 37%]
bmtk/tests/simulator/filternet/lgnmodel/test_utils.py . [ 37%]
bmtk/tests/simulator/filternet/test_default_setters.py ................. [ 42%]
. [ 42%]
bmtk/tests/simulator/filternet/test_filternet_movies.py . [ 42%]
bmtk/tests/simulator/pointnet/test_multimeter_report.py ssss [ 43%]
bmtk/tests/simulator/pointnet/test_pointgraph.py ss [ 44%]
bmtk/tests/simulator/pointnet/test_pointnetwork.py sssssssssssssssss [ 49%]
bmtk/tests/simulator/popnet/test_popgraph.py s [ 49%]
bmtk/tests/simulator/utils/test_simulation_inputs.py ..... [ 50%]
bmtk/tests/simulator/utils/test_simulation_reports.py .... [ 51%]
bmtk/tests/utils/reports/compartment/test_compartment_reader.py .. [ 52%]
bmtk/tests/utils/reports/compartment/test_compartment_writer.py ...... [ 54%]
bmtk/tests/utils/reports/compartment/test_plotting.py ......... [ 56%]
bmtk/tests/utils/reports/spike_trains/test_csv_adaptor.py .............. [ 60%]
[ 60%]
bmtk/tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py .......... [ 63%]
...... [ 64%]
bmtk/tests/utils/reports/spike_trains/test_plotting.py ................. [ 69%]
... [ 70%]
bmtk/tests/utils/reports/spike_trains/test_sonata_adaptor.py ........... [ 73%]
................ [ 77%]
bmtk/tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py ....... [ 79%]
............. [ 83%]
bmtk/tests/utils/reports/spike_trains/test_spikes_buffer.py ............ [ 86%]
...... [ 88%]
bmtk/tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py ........ [ 90%]
........ [ 92%]
bmtk/tests/utils/reports/spike_trains/test_spikes_core.py ..... [ 94%]
bmtk/tests/utils/sonata/test_config.py ........... [ 97%]
bmtk/tests/utils/sonata/test_config_validator.py .... [ 98%]
bmtk/tests/utils/sonata/test_edge_stats.py ...... [100%]
=============================== warnings summary ===============================
.pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
/build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/index_builders.py:205: FutureWarning: Series.fillna with 'method' is deprecated and will raise in a future version. Use obj.ffill() or obj.bfill() instead.
i2r_table_df['range_end'] = i2r_table_df['range_end'].fillna(method='ffill')
.pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
/build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/index_builders.py:206: FutureWarning: A value is trying to be set on a copy of a DataFrame or Series through chained assignment using an inplace method.
The behavior will change in pandas 3.0. This inplace method will never work because the intermediate object on which we are setting values always behaves as a copy.
For example, when doing 'df[col].method(value, inplace=True)', try using 'df.method({col: value}, inplace=True)' or df[col] = df[col].method(value) instead, to perform the operation inplace on the original object.
i2r_table_df['range_end'].fillna(0, inplace=True)
.pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
/build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/index_builders.py:209: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0!
You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy.
df["col"][row_indexer] = value
Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`.
See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy
i2r_table_df['range_beg'][nans_mask] = i2r_table_df['range_end'][nans_mask]
.pybuild/cpython3_3.12/build/bmtk/tests/simulator/core/test_simulation_config_validator.py::test_validate_network
/build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core/simulation_config_validator.py:30: DeprecationWarning: Subclassing validator classes is not intended to be part of their public API. A future version will make doing so an error, as the behavior of subclasses isn't guaranteed to stay the same between releases of jsonschema. Instead, prefer composition of validators, wrapping them in an object owned entirely by the downstream library.
.pybuild/cpython3_3.12/build/bmtk/tests/simulator/filternet/lgnmodel/test_subclass_metrics.py::test_get_data_metrics[sus_sus-expected_val4]
.pybuild/cpython3_3.12/build/bmtk/tests/simulator/filternet/lgnmodel/test_subclass_metrics.py::test_get_data_metrics[trans_sus-expected_val5]
/build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel/cellmetrics.py:57: FutureWarning: The behavior of DataFrame.idxmax with all-NA values, or any-NA and skipna=False, is deprecated. In a future version this will raise ValueError
exp_df['max_tf'] = sub_df.idxmax(axis=1).values # sub_df.idxmax(axis=1)
.pybuild/cpython3_3.12/build/bmtk/tests/utils/sonata/test_edge_stats.py::test_edge_props_distribution
.pybuild/cpython3_3.12/build/bmtk/tests/utils/sonata/test_edge_stats.py::test_edge_props_distribution
.pybuild/cpython3_3.12/build/bmtk/tests/utils/sonata/test_edge_stats.py::test_edge_props_distribution
.pybuild/cpython3_3.12/build/bmtk/tests/utils/sonata/test_edge_stats.py::test_edge_props_distribution
.pybuild/cpython3_3.12/build/bmtk/tests/utils/sonata/test_edge_stats.py::test_nsyns_distribution
.pybuild/cpython3_3.12/build/bmtk/tests/utils/sonata/test_edge_stats.py::test_nsyns_distribution
.pybuild/cpython3_3.12/build/bmtk/tests/utils/sonata/test_edge_stats.py::test_nsyns_distribution
/build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata/edge_stats.py:282: FutureWarning: Downcasting object dtype arrays on .fillna, .ffill, .bfill is deprecated and will change in a future version. Call result.infer_objects(copy=False) instead. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)`
edges_df[edge_prop] = fill_val if edge_prop not in edges_df.columns else edges_df[edge_prop].fillna(fill_val)
.pybuild/cpython3_3.12/build/bmtk/tests/utils/sonata/test_edge_stats.py::test_edge_stats_table
/build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata/edge_stats.py:434: FutureWarning: Downcasting object dtype arrays on .fillna, .ffill, .bfill is deprecated and will change in a future version. Call result.infer_objects(copy=False) instead. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)`
edges_df['nsyns'] = 1 if 'nsyns' not in edges_df.columns else edges_df['nsyns'].fillna(1)
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================ 311 passed, 55 skipped, 29 warnings in 17.97s =================
I: pybuild pybuild:308: cp -r /build/reproducible-path/bmtk-1.1.1+ds/bmtk/tests /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/
I: pybuild base:311: cd /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build; python3.13 -m pytest
============================= test session starts ==============================
platform linux -- Python 3.13.1, pytest-8.3.4, pluggy-1.5.0
rootdir: /build/reproducible-path/bmtk-1.1.1+ds
plugins: typeguard-4.4.1
NEURON mechanisms not found in /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/tests/simulator/bionet/components/mechanisms.
collected 399 items / 1 skipped
bmtk/tests/builder/auxi/test_edge_connectors.py .. [ 0%]
bmtk/tests/builder/auxi/test_node_params.py ......s [ 2%]
bmtk/tests/builder/bionet/test_swc_reader.py s [ 2%]
bmtk/tests/builder/test_connection_map.py ....... [ 4%]
bmtk/tests/builder/test_connector.py ..... [ 5%]
bmtk/tests/builder/test_densenetwork.py ... [ 6%]
bmtk/tests/builder/test_edge_iterator.py ... [ 7%]
bmtk/tests/builder/test_edges_sorter.py ... [ 7%]
bmtk/tests/builder/test_id_generator.py ...... [ 9%]
bmtk/tests/builder/test_index_builders.py .. [ 9%]
bmtk/tests/builder/test_iterator.py ........ [ 11%]
bmtk/tests/builder/test_network.py ............ [ 14%]
bmtk/tests/builder/test_network_mpi.py ssssssss [ 16%]
bmtk/tests/builder/test_node_pool.py ..... [ 18%]
bmtk/tests/builder/test_node_set.py ... [ 18%]
bmtk/tests/builder/test_save_network.py ...... [ 20%]
bmtk/tests/simulator/bionet/test_biograph.py ss [ 20%]
bmtk/tests/simulator/bionet/test_gids.py . [ 21%]
bmtk/tests/simulator/bionet/test_iclamp.py .................. [ 25%]
bmtk/tests/simulator/bionet/test_morphology.py F.FFFs..FF [ 28%]
bmtk/tests/simulator/bionet/test_nrn.py ....sss [ 29%]
bmtk/tests/simulator/bionet/test_virtualcell.py sssssssss [ 32%]
bmtk/tests/simulator/core/test_ecephys_module.py sssssss [ 33%]
bmtk/tests/simulator/core/test_iclamp.py ..... [ 35%]
bmtk/tests/simulator/core/test_io_tools.py .. [ 35%]
bmtk/tests/simulator/core/test_pyfunction_cache.py ...... [ 37%]
bmtk/tests/simulator/core/test_simulation_config.py .. [ 37%]
bmtk/tests/simulator/core/test_simulation_config_validator.py ... [ 38%]
bmtk/tests/simulator/filternet/lgnmodel/test_kernels.py ... [ 39%]
bmtk/tests/simulator/filternet/lgnmodel/test_movie.py ..... [ 40%]
bmtk/tests/simulator/filternet/lgnmodel/test_subclass_metrics.py ...... [ 41%]
bmtk/tests/simulator/filternet/lgnmodel/test_transferfunction.py . [ 42%]
bmtk/tests/simulator/filternet/lgnmodel/test_units.py .... [ 43%]
bmtk/tests/simulator/filternet/lgnmodel/test_utils.py . [ 43%]
bmtk/tests/simulator/filternet/test_default_setters.py ................. [ 47%]
. [ 47%]
bmtk/tests/simulator/filternet/test_filternet_movies.py . [ 48%]
bmtk/tests/simulator/pointnet/test_multimeter_report.py ssss [ 49%]
bmtk/tests/simulator/pointnet/test_pointgraph.py ss [ 49%]
bmtk/tests/simulator/pointnet/test_pointnetwork.py sssssssssssssssss [ 53%]
bmtk/tests/simulator/popnet/test_popgraph.py s [ 54%]
bmtk/tests/simulator/utils/test_simulation_inputs.py ..... [ 55%]
bmtk/tests/simulator/utils/test_simulation_reports.py .... [ 56%]
bmtk/tests/utils/reports/compartment/test_compartment_reader.py .. [ 56%]
bmtk/tests/utils/reports/compartment/test_compartment_writer.py ...... [ 58%]
bmtk/tests/utils/reports/compartment/test_plotting.py ......... [ 60%]
bmtk/tests/utils/reports/spike_trains/test_csv_adaptor.py .............. [ 64%]
[ 64%]
bmtk/tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py .......... [ 66%]
...... [ 68%]
bmtk/tests/utils/reports/spike_trains/test_plotting.py ................. [ 72%]
... [ 73%]
bmtk/tests/utils/reports/spike_trains/test_sonata_adaptor.py ........... [ 75%]
................ [ 79%]
bmtk/tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py ....... [ 81%]
............. [ 84%]
bmtk/tests/utils/reports/spike_trains/test_spikes_buffer.py ............ [ 87%]
...... [ 89%]
bmtk/tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py ........ [ 91%]
........ [ 93%]
bmtk/tests/utils/reports/spike_trains/test_spikes_core.py ..... [ 94%]
bmtk/tests/utils/sonata/test_config.py ........... [ 97%]
bmtk/tests/utils/sonata/test_config_validator.py .... [ 98%]
bmtk/tests/utils/sonata/test_edge_stats.py ...... [100%]
=================================== FAILURES ===================================
__________________________________ test_base ___________________________________
@pytest.mark.skipif(not has_mechanism, reason='Mechanisms has not been compiled, run nrnivmodl mechanisms.')
@pytest.mark.skipif(not nrn_installed, reason='NEURON is not installed')
hobj = load_hobj()
morph = Morphology(hobj)
assert(morph.nseg == 87)
assert(len(morph.seg_props.type) == 87)
assert(len(morph.seg_props.area) == 87)
assert(len(morph.seg_props.x) == 87)
assert(len(morph.seg_props.dist) == 87)
assert(len(morph.seg_props.length) == 87)
assert(morph.seg_props.type[0] == 1 and morph.seg_props.type[1] == 2)
assert(np.isclose(morph.seg_props.area[0], 425.756, atol=1.0e-2))
assert(morph.seg_props.x[0] == 0.5)
assert(np.isclose(morph.seg_props.dist[0], 5.82, atol=1.0e-2))
assert(np.isclose(morph.seg_props.length[0], 11.64, atol=1.0e-2))
bmtk/simulator/bionet/morphology.py:311: in seg_coords
return self._seg_coords.get()
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <bmtk.simulator.bionet.morphology._LazySegmentCoords object at 0x7fe2cea82900>
# Iterates through each segment (one section may contain one or more segments). We use NEURON's
# segment.x to get the mid-point and lenght of each segment we we can use to find and store the beginning
# (p0) and end (p1) of each segment. We also shift so the middle of the soma is at the origin.
bmtk/simulator/bionet/morphology.py:117: TypeError
__________________________________ test_full ___________________________________
@pytest.mark.skipif(not has_mechanism, reason='Mechanisms has not been compiled, run nrnivmodl mechanisms.')
@pytest.mark.skipif(not nrn_installed, reason='NEURON is not installed')
hobj = load_hobj()
fix_axon_peri(hobj)
morph = Morphology(hobj)
morph.set_segment_dl(20.0)
rotation_angles=[90.0, 180.0, 0.0]
)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
bmtk/simulator/bionet/morphology.py:422: in move_and_rotate
old_seg_coords = self.seg_coords
bmtk/simulator/bionet/morphology.py:311: in seg_coords
return self._seg_coords.get()
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <bmtk.simulator.bionet.morphology._LazySegmentCoords object at 0x7fe2ce865250>
# Iterates through each segment (one section may contain one or more segments). We use NEURON's
# segment.x to get the mid-point and lenght of each segment we we can use to find and store the beginning
# (p0) and end (p1) of each segment. We also shift so the middle of the soma is at the origin.
bmtk/simulator/bionet/morphology.py:117: TypeError
________________________________ test_multicell ________________________________
@pytest.mark.skipif(not has_mechanism, reason='Mechanisms has not been compiled, run nrnivmodl mechanisms.')
@pytest.mark.skipif(not nrn_installed, reason='NEURON is not installed')
hobj = load_hobj()
fix_axon_peri(hobj)
morph = Morphology(hobj)
morph.set_segment_dl(20.0)
rotation_angles=[0.0, 0.0, 0.0]
)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
bmtk/simulator/bionet/morphology.py:422: in move_and_rotate
old_seg_coords = self.seg_coords
bmtk/simulator/bionet/morphology.py:311: in seg_coords
return self._seg_coords.get()
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <bmtk.simulator.bionet.morphology._LazySegmentCoords object at 0x7fe2ce885040>
# Iterates through each segment (one section may contain one or more segments). We use NEURON's
# segment.x to get the mid-point and lenght of each segment we we can use to find and store the beginning
# (p0) and end (p1) of each segment. We also shift so the middle of the soma is at the origin.
bmtk/simulator/bionet/morphology.py:117: TypeError
______________________________ test_find_sections ______________________________
@pytest.mark.skipif(not has_mechanism, reason='Mechanisms has not been compiled, run nrnivmodl mechanisms.')
@pytest.mark.skipif(not nrn_installed, reason='NEURON is not installed')
hobj = load_hobj()
fix_axon_peri(hobj)
morph = Morphology(hobj)
morph.set_segment_dl(20.0)
rotation_angles=[90.0, 180.0, 0.0]
)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
bmtk/simulator/bionet/morphology.py:422: in move_and_rotate
old_seg_coords = self.seg_coords
bmtk/simulator/bionet/morphology.py:311: in seg_coords
return self._seg_coords.get()
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <bmtk.simulator.bionet.morphology._LazySegmentCoords object at 0x7fe2ce8859d0>
# Iterates through each segment (one section may contain one or more segments). We use NEURON's
# segment.x to get the mid-point and lenght of each segment we we can use to find and store the beginning
# (p0) and end (p1) of each segment. We also shift so the middle of the soma is at the origin.
bmtk/simulator/bionet/morphology.py:117: TypeError
_____________________________ test_move_and_rotate _____________________________
@pytest.mark.skipif(not has_mechanism, reason='Mechanisms has not been compiled, run nrnivmodl mechanisms.')
@pytest.mark.skipif(not nrn_installed, reason='NEURON is not installed')
hobj = load_hobj()
# fix_axon_peri(hobj)
morph1 = Morphology(hobj)
rotation_angles=[90.0, 180.0, 0.0],
inplace=False
)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
bmtk/simulator/bionet/morphology.py:422: in move_and_rotate
old_seg_coords = self.seg_coords
bmtk/simulator/bionet/morphology.py:311: in seg_coords
return self._seg_coords.get()
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <bmtk.simulator.bionet.morphology._LazySegmentCoords object at 0x7fe2ce754bb0>
# Iterates through each segment (one section may contain one or more segments). We use NEURON's
# segment.x to get the mid-point and lenght of each segment we we can use to find and store the beginning
# (p0) and end (p1) of each segment. We also shift so the middle of the soma is at the origin.
bmtk/simulator/bionet/morphology.py:117: TypeError
_________________________ test_move_and_rotate_cached __________________________
@pytest.mark.skipif(not has_mechanism, reason='Mechanisms has not been compiled, run nrnivmodl mechanisms.')
@pytest.mark.skipif(not nrn_installed, reason='NEURON is not installed')
hobj = load_hobj()
morph1 = Morphology.load(hobj, morphology_file=RORB_SWC_PATH, cache_seg_props=True)
morph2 = Morphology.load(hobj, morphology_file=RORB_SWC_PATH, cache_seg_props=True)
# initially morph1 and morph2 share the same SegmentCoords object, make sure after a move_and_rotate is done
# the two morphology has different coordinates
bmtk/simulator/bionet/morphology.py:311: in seg_coords
return self._seg_coords.get()
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <bmtk.simulator.bionet.morphology._LazySegmentCoords object at 0x7fe2ce80cb90>
# Iterates through each segment (one section may contain one or more segments). We use NEURON's
# segment.x to get the mid-point and lenght of each segment we we can use to find and store the beginning
# (p0) and end (p1) of each segment. We also shift so the middle of the soma is at the origin.
bmtk/simulator/bionet/morphology.py:117: TypeError
=============================== warnings summary ===============================
.pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
/build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/index_builders.py:205: FutureWarning: Series.fillna with 'method' is deprecated and will raise in a future version. Use obj.ffill() or obj.bfill() instead.
i2r_table_df['range_end'] = i2r_table_df['range_end'].fillna(method='ffill')
.pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
/build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/index_builders.py:206: FutureWarning: A value is trying to be set on a copy of a DataFrame or Series through chained assignment using an inplace method.
The behavior will change in pandas 3.0. This inplace method will never work because the intermediate object on which we are setting values always behaves as a copy.
For example, when doing 'df[col].method(value, inplace=True)', try using 'df.method({col: value}, inplace=True)' or df[col] = df[col].method(value) instead, to perform the operation inplace on the original object.
i2r_table_df['range_end'].fillna(0, inplace=True)
.pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
/build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/index_builders.py:209: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0!
You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy.
df["col"][row_indexer] = value
Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`.
See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy
i2r_table_df['range_beg'][nans_mask] = i2r_table_df['range_end'][nans_mask]
.pybuild/cpython3_3.13/build/bmtk/tests/simulator/core/test_simulation_config_validator.py::test_validate_network
/build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core/simulation_config_validator.py:30: DeprecationWarning: Subclassing validator classes is not intended to be part of their public API. A future version will make doing so an error, as the behavior of subclasses isn't guaranteed to stay the same between releases of jsonschema. Instead, prefer composition of validators, wrapping them in an object owned entirely by the downstream library.
.pybuild/cpython3_3.13/build/bmtk/tests/simulator/filternet/lgnmodel/test_subclass_metrics.py::test_get_data_metrics[sus_sus-expected_val4]
.pybuild/cpython3_3.13/build/bmtk/tests/simulator/filternet/lgnmodel/test_subclass_metrics.py::test_get_data_metrics[trans_sus-expected_val5]
/build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel/cellmetrics.py:57: FutureWarning: The behavior of DataFrame.idxmax with all-NA values, or any-NA and skipna=False, is deprecated. In a future version this will raise ValueError
exp_df['max_tf'] = sub_df.idxmax(axis=1).values # sub_df.idxmax(axis=1)
.pybuild/cpython3_3.13/build/bmtk/tests/utils/sonata/test_edge_stats.py::test_edge_props_distribution
.pybuild/cpython3_3.13/build/bmtk/tests/utils/sonata/test_edge_stats.py::test_edge_props_distribution
.pybuild/cpython3_3.13/build/bmtk/tests/utils/sonata/test_edge_stats.py::test_edge_props_distribution
.pybuild/cpython3_3.13/build/bmtk/tests/utils/sonata/test_edge_stats.py::test_edge_props_distribution
.pybuild/cpython3_3.13/build/bmtk/tests/utils/sonata/test_edge_stats.py::test_nsyns_distribution
.pybuild/cpython3_3.13/build/bmtk/tests/utils/sonata/test_edge_stats.py::test_nsyns_distribution
.pybuild/cpython3_3.13/build/bmtk/tests/utils/sonata/test_edge_stats.py::test_nsyns_distribution
/build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata/edge_stats.py:282: FutureWarning: Downcasting object dtype arrays on .fillna, .ffill, .bfill is deprecated and will change in a future version. Call result.infer_objects(copy=False) instead. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)`
edges_df[edge_prop] = fill_val if edge_prop not in edges_df.columns else edges_df[edge_prop].fillna(fill_val)
.pybuild/cpython3_3.13/build/bmtk/tests/utils/sonata/test_edge_stats.py::test_edge_stats_table
/build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata/edge_stats.py:434: FutureWarning: Downcasting object dtype arrays on .fillna, .ffill, .bfill is deprecated and will change in a future version. Call result.infer_objects(copy=False) instead. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)`
edges_df['nsyns'] = 1 if 'nsyns' not in edges_df.columns else edges_df['nsyns'].fillna(1)
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
=========================== short test summary info ============================
FAILED bmtk/tests/simulator/bionet/test_morphology.py::test_base - TypeError:...
FAILED bmtk/tests/simulator/bionet/test_morphology.py::test_full - TypeError:...
FAILED bmtk/tests/simulator/bionet/test_morphology.py::test_multicell - TypeE...
FAILED bmtk/tests/simulator/bionet/test_morphology.py::test_find_sections - T...
FAILED bmtk/tests/simulator/bionet/test_morphology.py::test_move_and_rotate
FAILED bmtk/tests/simulator/bionet/test_morphology.py::test_move_and_rotate_cached
=========== 6 failed, 337 passed, 57 skipped, 29 warnings in 19.80s ============
E: pybuild pybuild:389: test: plugin distutils failed with: exit code=1: cd /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build; python3.13 -m pytest
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.12 3.13" returned exit code 13
The full build log is available from:dh_auto_build
I: pybuild base:311: /usr/bin/python3.12 setup.py build
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require'
warnings.warn(msg)
running build
running build_py
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk
copying bmtk/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/analyzer
copying bmtk/analyzer/spikes_analyzer.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/analyzer
copying bmtk/analyzer/firing_rates.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/analyzer
copying bmtk/analyzer/utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/analyzer
copying bmtk/analyzer/ecp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/analyzer
copying bmtk/analyzer/edges.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/analyzer
copying bmtk/analyzer/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/analyzer
copying bmtk/analyzer/compartment.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/analyzer
copying bmtk/analyzer/spike_trains.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/analyzer
copying bmtk/analyzer/io_tools.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/analyzer
copying bmtk/analyzer/cell_vars.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/analyzer
copying bmtk/analyzer/spikes_loader.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/analyzer
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils
copying bmtk/utils/sim_setup.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils
copying bmtk/utils/hdf5_helper.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils
copying bmtk/utils/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils
copying bmtk/utils/lazy_property.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder
copying bmtk/builder/node_set.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder
copying bmtk/builder/builder_utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder
copying bmtk/builder/id_generator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder
copying bmtk/builder/network_builder.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder
copying bmtk/builder/edge.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder
copying bmtk/builder/networks.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder
copying bmtk/builder/index_builders.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder
copying bmtk/builder/node.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder
copying bmtk/builder/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder
copying bmtk/builder/connection_map.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder
copying bmtk/builder/iterator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder
copying bmtk/builder/node_pool.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder
copying bmtk/builder/connector.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder
copying bmtk/builder/functor_cache.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator
copying bmtk/simulator/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata
copying bmtk/utils/sonata/file.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata
copying bmtk/utils/sonata/utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata
copying bmtk/utils/sonata/edge.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata
copying bmtk/utils/sonata/population.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata
copying bmtk/utils/sonata/file_root.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata
copying bmtk/utils/sonata/column_property.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata
copying bmtk/utils/sonata/node.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata
copying bmtk/utils/sonata/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata
copying bmtk/utils/sonata/edge_stats.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata
copying bmtk/utils/sonata/types_table.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata
copying bmtk/utils/sonata/group.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/compile_mechanisms
copying bmtk/utils/compile_mechanisms/compile_mechanisms.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/compile_mechanisms
copying bmtk/utils/compile_mechanisms/__main__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/compile_mechanisms
copying bmtk/utils/compile_mechanisms/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/compile_mechanisms
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/cell_types_db
copying bmtk/utils/cell_types_db/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/cell_types_db
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports
copying bmtk/utils/reports/current_writer.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports
copying bmtk/utils/reports/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/create_environment
copying bmtk/utils/create_environment/create_environment.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/create_environment
copying bmtk/utils/create_environment/env_builder.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/create_environment
copying bmtk/utils/create_environment/__main__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/create_environment
copying bmtk/utils/create_environment/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/create_environment
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/io
copying bmtk/utils/io/firing_rates.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/io
copying bmtk/utils/io/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/io
copying bmtk/utils/io/spike_trains.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/io
copying bmtk/utils/io/ioutils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/io
copying bmtk/utils/io/cell_vars.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/io
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata/config
copying bmtk/utils/sonata/config/sonata_config.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata/config
copying bmtk/utils/sonata/config/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata/config
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/spike_trains
copying bmtk/utils/reports/spike_trains/spikes_file_writers.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/spike_trains
copying bmtk/utils/reports/spike_trains/spike_train_readers.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/spike_trains
copying bmtk/utils/reports/spike_trains/core.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/spike_trains
copying bmtk/utils/reports/spike_trains/spike_trains_api.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/spike_trains
copying bmtk/utils/reports/spike_trains/stats.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/spike_trains
copying bmtk/utils/reports/spike_trains/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/spike_trains
copying bmtk/utils/reports/spike_trains/spike_trains.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/spike_trains
copying bmtk/utils/reports/spike_trains/plotting.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/spike_trains
copying bmtk/utils/reports/spike_trains/spike_train_buffer.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/spike_trains
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/compartment
copying bmtk/utils/reports/compartment/core.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/compartment
copying bmtk/utils/reports/compartment/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/compartment
copying bmtk/utils/reports/compartment/compartment_writer.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/compartment
copying bmtk/utils/reports/compartment/plotting.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/compartment
copying bmtk/utils/reports/compartment/compartment_report.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/compartment
copying bmtk/utils/reports/compartment/compartment_reader.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/reports/compartment
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/network_adaptors
copying bmtk/builder/network_adaptors/dm_network.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/network_adaptors
copying bmtk/builder/network_adaptors/edge_props_table.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/network_adaptors
copying bmtk/builder/network_adaptors/nxnetwork.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/network_adaptors
copying bmtk/builder/network_adaptors/network.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/network_adaptors
copying bmtk/builder/network_adaptors/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/network_adaptors
copying bmtk/builder/network_adaptors/dm_network_orig.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/network_adaptors
copying bmtk/builder/network_adaptors/edges_collator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/network_adaptors
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/bionet
copying bmtk/builder/bionet/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/bionet
copying bmtk/builder/bionet/swc_reader.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/bionet
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/edges_sorter
copying bmtk/builder/edges_sorter/memory_sorter.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/edges_sorter
copying bmtk/builder/edges_sorter/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/edges_sorter
copying bmtk/builder/edges_sorter/merge_sorter.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/edges_sorter
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/auxi
copying bmtk/builder/auxi/edge_connectors.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/auxi
copying bmtk/builder/auxi/node_params.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/auxi
copying bmtk/builder/auxi/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/auxi
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet
copying bmtk/simulator/pointnet/utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet
copying bmtk/simulator/pointnet/pyfunction_cache.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet
copying bmtk/simulator/pointnet/gids.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet
copying bmtk/simulator/pointnet/nest_utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet
copying bmtk/simulator/pointnet/config.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet
copying bmtk/simulator/pointnet/property_map.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet
copying bmtk/simulator/pointnet/sonata_adaptors.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet
copying bmtk/simulator/pointnet/glif_utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet
copying bmtk/simulator/pointnet/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet
copying bmtk/simulator/pointnet/io_tools.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet
copying bmtk/simulator/pointnet/pointnetwork.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet
copying bmtk/simulator/pointnet/pointsimulator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/cell_models.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/auditory_processing.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/filtersimulator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/pyfunction_cache.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/cell.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/config.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/filternetwork.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/sonata_adaptors.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/transfer_functions.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/filters.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/io_tools.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/popnet
copying bmtk/simulator/popnet/utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/popnet
copying bmtk/simulator/popnet/popnetwork.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/popnet
copying bmtk/simulator/popnet/popnode.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/popnet
copying bmtk/simulator/popnet/config.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/popnet
copying bmtk/simulator/popnet/popedge.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/popnet
copying bmtk/simulator/popnet/sonata_adaptors.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/popnet
copying bmtk/simulator/popnet/popsimulator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/popnet
copying bmtk/simulator/popnet/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/popnet
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/utils
copying bmtk/simulator/utils/simulation_reports.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/utils
copying bmtk/simulator/utils/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/utils
copying bmtk/simulator/utils/simulation_inputs.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/utils
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/iclamp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/pyfunction_cache.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/gids.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/cell.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/config.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/seclamp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/sonata_adaptors.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/nrn.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/morphology.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/bionetwork.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/virtualcell.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/io_tools.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/pointsomacell.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/biosimulator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/pointprocesscell.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/biocell.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/nml_reader.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core
copying bmtk/simulator/core/simulation_config_validator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core
copying bmtk/simulator/core/network_reader.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core
copying bmtk/simulator/core/pyfunction_cache.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core
copying bmtk/simulator/core/edge_population.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core
copying bmtk/simulator/core/simulator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core
copying bmtk/simulator/core/simulator_network.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core
copying bmtk/simulator/core/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core
copying bmtk/simulator/core/simulation_config.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core
copying bmtk/simulator/core/io_tools.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core
copying bmtk/simulator/core/node_sets.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core
copying bmtk/simulator/core/node_population.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core
copying bmtk/simulator/core/graph.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet/modules
copying bmtk/simulator/pointnet/modules/multimeter_reporter.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet/modules
copying bmtk/simulator/pointnet/modules/spikes_inputs.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet/modules
copying bmtk/simulator/pointnet/modules/iclamp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet/modules
copying bmtk/simulator/pointnet/modules/sim_module.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet/modules
copying bmtk/simulator/pointnet/modules/ecephys_module.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet/modules
copying bmtk/simulator/pointnet/modules/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet/modules
copying bmtk/simulator/pointnet/modules/record_spikes.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet/modules
copying bmtk/simulator/pointnet/modules/weight_recorder.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet/modules
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet/default_setters
copying bmtk/simulator/pointnet/default_setters/cell_models.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet/default_setters
copying bmtk/simulator/pointnet/default_setters/synapse_models.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet/default_setters
copying bmtk/simulator/pointnet/default_setters/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet/default_setters
copying bmtk/simulator/pointnet/default_setters/synaptic_weights.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/pointnet/default_setters
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/util_fns.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/cellmetrics.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/lnunit.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/cellmodel.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/singleunitcell.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/temporalfilter.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/linearfilter.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/lattice_unit_constructor.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/fitfuns.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/lgnmodel1.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/cursor.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/transferfunction.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/poissongeneration.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/kernel.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/movie.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/gaborfilter.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/utilities.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/waveletfilter.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/make_cell_list.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/spatialfilter.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/modules
copying bmtk/simulator/filternet/modules/create_spikes.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/modules
copying bmtk/simulator/filternet/modules/base.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/modules
copying bmtk/simulator/filternet/modules/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/modules
copying bmtk/simulator/filternet/modules/record_rates.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/modules
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/default_setters
copying bmtk/simulator/filternet/default_setters/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/default_setters
copying bmtk/simulator/filternet/default_setters/cell_loaders.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/default_setters
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/comsol.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/ecp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/iclamp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/seclamp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/sim_module.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/xstim_waveforms.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/xstim.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/ecephys_module.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/record_netcons.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/record_clamp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/record_spikes.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/record_cellvars.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/save_synapses.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/modules
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/default_setters
copying bmtk/simulator/bionet/default_setters/cell_models.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/default_setters
copying bmtk/simulator/bionet/default_setters/synapse_models.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/default_setters
copying bmtk/simulator/bionet/default_setters/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/default_setters
copying bmtk/simulator/bionet/default_setters/synaptic_weights.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/default_setters
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core/sonata_reader
copying bmtk/simulator/core/sonata_reader/network_reader.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core/sonata_reader
copying bmtk/simulator/core/sonata_reader/node_adaptor.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core/sonata_reader
copying bmtk/simulator/core/sonata_reader/edge_adaptor.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core/sonata_reader
copying bmtk/simulator/core/sonata_reader/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core/sonata_reader
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core/modules
copying bmtk/simulator/core/modules/iclamp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core/modules
copying bmtk/simulator/core/modules/ecephys_module.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core/modules
copying bmtk/simulator/core/modules/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core/modules
copying bmtk/simulator/core/modules/simulator_module.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core/modules
running egg_info
creating bmtk.egg-info
writing bmtk.egg-info/PKG-INFO
writing dependency_links to bmtk.egg-info/dependency_links.txt
writing requirements to bmtk.egg-info/requires.txt
writing top-level names to bmtk.egg-info/top_level.txt
writing manifest file 'bmtk.egg-info/SOURCES.txt'
reading manifest file 'bmtk.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.txt' under directory 'bmtk'
warning: no files found matching '*.cfg' under directory 'bmtk'
adding license file 'LICENSE.txt'
writing manifest file 'bmtk.egg-info/SOURCES.txt'
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.simulator.bionet.default_templates' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.simulator.bionet.default_templates' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.simulator.bionet.default_templates' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.simulator.bionet.default_templates' to be distributed and are
already explicitly excluding 'bmtk.simulator.bionet.default_templates' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.simulator.bionet.import3d' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.simulator.bionet.import3d' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.simulator.bionet.import3d' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.simulator.bionet.import3d' to be distributed and are
already explicitly excluding 'bmtk.simulator.bionet.import3d' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.simulator.bionet.schemas' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.simulator.bionet.schemas' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.simulator.bionet.schemas' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.simulator.bionet.schemas' to be distributed and are
already explicitly excluding 'bmtk.simulator.bionet.schemas' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.simulator.core.sonata_schemas' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.simulator.core.sonata_schemas' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.simulator.core.sonata_schemas' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.simulator.core.sonata_schemas' to be distributed and are
already explicitly excluding 'bmtk.simulator.core.sonata_schemas' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.simulator.filternet.lgnmodel.cell_metrics' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.simulator.filternet.lgnmodel.cell_metrics' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.simulator.filternet.lgnmodel.cell_metrics' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.simulator.filternet.lgnmodel.cell_metrics' to be distributed and are
already explicitly excluding 'bmtk.simulator.filternet.lgnmodel.cell_metrics' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.bionet' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.bionet' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.bionet' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.bionet' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.bionet' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.bionet.biophysical_neuron_models' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.bionet.biophysical_neuron_models' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.bionet.biophysical_neuron_models' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.bionet.biophysical_neuron_models' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.bionet.biophysical_neuron_models' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.bionet.filter_models' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.bionet.filter_models' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.bionet.filter_models' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.bionet.filter_models' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.bionet.filter_models' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.bionet.mechanisms.modfiles' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.bionet.mechanisms.modfiles' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.bionet.mechanisms.modfiles' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.bionet.mechanisms.modfiles' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.bionet.mechanisms.modfiles' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.bionet.morphologies' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.bionet.morphologies' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.bionet.morphologies' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.bionet.morphologies' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.bionet.morphologies' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.bionet.point_neuron_models' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.bionet.point_neuron_models' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.bionet.point_neuron_models' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.bionet.point_neuron_models' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.bionet.point_neuron_models' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.bionet.synaptic_models' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.bionet.synaptic_models' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.bionet.synaptic_models' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.bionet.synaptic_models' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.bionet.synaptic_models' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.bionet.templates' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.bionet.templates' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.bionet.templates' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.bionet.templates' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.bionet.templates' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.filternet' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.filternet' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.filternet' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.filternet' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.filternet' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.filternet.filter_models' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.filternet.filter_models' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.filternet.filter_models' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.filternet.filter_models' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.filternet.filter_models' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.pointnet' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.pointnet' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.pointnet' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.pointnet' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.pointnet' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.pointnet.filter_models' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.pointnet.filter_models' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.pointnet.filter_models' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.pointnet.filter_models' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.pointnet.filter_models' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.pointnet.point_neuron_models' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.pointnet.point_neuron_models' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.pointnet.point_neuron_models' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.pointnet.point_neuron_models' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.pointnet.point_neuron_models' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.pointnet.synaptic_models' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.pointnet.synaptic_models' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.pointnet.synaptic_models' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.pointnet.synaptic_models' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.pointnet.synaptic_models' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.popnet' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.popnet' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.popnet' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.popnet' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.popnet' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.popnet.population_models' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.popnet.population_models' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.popnet.population_models' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.popnet.population_models' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.popnet.population_models' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.popnet.synaptic_models' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.popnet.synaptic_models' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.popnet.synaptic_models' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.popnet.synaptic_models' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.popnet.synaptic_models' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts
copying bmtk/utils/scripts/sonata.circuit_config.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts
copying bmtk/utils/scripts/sonata.simulation_config.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet
copying bmtk/utils/scripts/bionet/default_config.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet
copying bmtk/utils/scripts/bionet/run_bionet.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
copying bmtk/utils/scripts/bionet/biophysical_neuron_models/318331342_fit.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
copying bmtk/utils/scripts/bionet/biophysical_neuron_models/472363762_fit.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
copying bmtk/utils/scripts/bionet/biophysical_neuron_models/472912177_fit.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
copying bmtk/utils/scripts/bionet/biophysical_neuron_models/473862421_fit.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
copying bmtk/utils/scripts/bionet/biophysical_neuron_models/473863035_fit.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
copying bmtk/utils/scripts/bionet/biophysical_neuron_models/473863510_fit.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
copying bmtk/utils/scripts/bionet/biophysical_neuron_models/485184849_fit.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/sOFF_TF1.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/sOFF_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/sOFF_TF2.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/sOFF_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/sOFF_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/sON_TF1.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/sON_TF2.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/sON_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/sON_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/tOFF_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/tOFF_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/tOFF_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/tON_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/tON_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/tON_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/tON_TF8_demo.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/filter_models
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/CaDynamics.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Ca_HVA.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Ca_LVA.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Ih.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Im.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Im_v2.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/K_P.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/K_T.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Kd.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Kv2like.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Kv3_1.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/NaTa.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/NaTs.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/NaV.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Nap.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/SK.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/vecevent.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/morphologies
copying bmtk/utils/scripts/bionet/morphologies/Nr5a1_471087815_m.swc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/morphologies
copying bmtk/utils/scripts/bionet/morphologies/Pvalb_469628681_m.swc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/morphologies
copying bmtk/utils/scripts/bionet/morphologies/Pvalb_470522102_m.swc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/morphologies
copying bmtk/utils/scripts/bionet/morphologies/Rorb_325404214_m.swc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/morphologies
copying bmtk/utils/scripts/bionet/morphologies/Scnn1a_473845048_m.swc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/morphologies
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/point_neuron_models
copying bmtk/utils/scripts/bionet/point_neuron_models/IntFire1_exc_1.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/point_neuron_models
copying bmtk/utils/scripts/bionet/point_neuron_models/IntFire1_inh_1.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/point_neuron_models
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/synaptic_models
copying bmtk/utils/scripts/bionet/synaptic_models/AMPA_ExcToExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/synaptic_models
copying bmtk/utils/scripts/bionet/synaptic_models/AMPA_ExcToInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/synaptic_models
copying bmtk/utils/scripts/bionet/synaptic_models/GABA_InhToExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/synaptic_models
copying bmtk/utils/scripts/bionet/synaptic_models/GABA_InhToInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/synaptic_models
copying bmtk/utils/scripts/bionet/synaptic_models/instantaneousExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/synaptic_models
copying bmtk/utils/scripts/bionet/synaptic_models/instantaneousInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/synaptic_models
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/templates
copying bmtk/utils/scripts/bionet/templates/BioAllen_old.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/templates
copying bmtk/utils/scripts/bionet/templates/BioAxonStub.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/templates
copying bmtk/utils/scripts/bionet/templates/Biophys1.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/bionet/templates
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet
copying bmtk/utils/scripts/filternet/run_filternet.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/sOFF_TF1.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/sOFF_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/sOFF_TF2.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/sOFF_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/sOFF_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/sON_TF1.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/sON_TF2.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/sON_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/sON_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/tOFF_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/tOFF_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/tOFF_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/tON_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/tON_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/tON_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/tON_TF8_demo.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/filternet/filter_models
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet
copying bmtk/utils/scripts/pointnet/run_pointnet.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/sOFF_TF1.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/sOFF_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/sOFF_TF2.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/sOFF_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/sOFF_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/sON_TF1.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/sON_TF2.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/sON_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/sON_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/tOFF_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/tOFF_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/tOFF_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/tON_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/tON_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/tON_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/tON_TF8_demo.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/filter_models
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/point_neuron_models
copying bmtk/utils/scripts/pointnet/point_neuron_models/472363762_point.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/point_neuron_models
copying bmtk/utils/scripts/pointnet/point_neuron_models/472912177_point.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/point_neuron_models
copying bmtk/utils/scripts/pointnet/point_neuron_models/473862421_point.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/point_neuron_models
copying bmtk/utils/scripts/pointnet/point_neuron_models/473863035_point.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/point_neuron_models
copying bmtk/utils/scripts/pointnet/point_neuron_models/473863510_point.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/point_neuron_models
copying bmtk/utils/scripts/pointnet/point_neuron_models/IntFire1_exc_point.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/point_neuron_models
copying bmtk/utils/scripts/pointnet/point_neuron_models/IntFire1_inh_point.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/point_neuron_models
copying bmtk/utils/scripts/pointnet/point_neuron_models/filter_point.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/point_neuron_models
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/synaptic_models
copying bmtk/utils/scripts/pointnet/synaptic_models/ExcToExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/synaptic_models
copying bmtk/utils/scripts/pointnet/synaptic_models/ExcToInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/synaptic_models
copying bmtk/utils/scripts/pointnet/synaptic_models/InhToExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/synaptic_models
copying bmtk/utils/scripts/pointnet/synaptic_models/InhToInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/synaptic_models
copying bmtk/utils/scripts/pointnet/synaptic_models/instantaneousExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/synaptic_models
copying bmtk/utils/scripts/pointnet/synaptic_models/instantaneousInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/pointnet/synaptic_models
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/popnet
copying bmtk/utils/scripts/popnet/run_popnet.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/popnet
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/popnet/population_models
copying bmtk/utils/scripts/popnet/population_models/exc_model.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/popnet/population_models
copying bmtk/utils/scripts/popnet/population_models/inh_model.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/popnet/population_models
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/popnet/synaptic_models
copying bmtk/utils/scripts/popnet/synaptic_models/ExcToExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/popnet/synaptic_models
copying bmtk/utils/scripts/popnet/synaptic_models/ExcToInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/popnet/synaptic_models
copying bmtk/utils/scripts/popnet/synaptic_models/InhToExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/popnet/synaptic_models
copying bmtk/utils/scripts/popnet/synaptic_models/InhToInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/popnet/synaptic_models
copying bmtk/utils/scripts/popnet/synaptic_models/input_ExcToExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/popnet/synaptic_models
copying bmtk/utils/scripts/popnet/synaptic_models/input_ExcToInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/scripts/popnet/synaptic_models
copying bmtk/utils/sonata/config/config_schema.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata/config
copying bmtk/simulator/bionet/README.md -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/import3d.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/default_templates
copying bmtk/simulator/bionet/default_templates/BioAxonStub.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/default_templates
copying bmtk/simulator/bionet/default_templates/Biophys1.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/default_templates
copying bmtk/simulator/bionet/default_templates/advance.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/default_templates
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/import3d
copying bmtk/simulator/bionet/import3d/import3d_gui.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/import3d
copying bmtk/simulator/bionet/import3d/import3d_sec.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/import3d
copying bmtk/simulator/bionet/import3d/read_morphml.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/import3d
copying bmtk/simulator/bionet/import3d/read_nlcda.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/import3d
copying bmtk/simulator/bionet/import3d/read_nlcda3.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/import3d
copying bmtk/simulator/bionet/import3d/read_nts.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/import3d
copying bmtk/simulator/bionet/import3d/read_swc.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/import3d
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/schemas
copying bmtk/simulator/bionet/schemas/config_schema.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/schemas
copying bmtk/simulator/bionet/schemas/csv_edge_types.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/schemas
copying bmtk/simulator/bionet/schemas/csv_node_types_external.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/schemas
copying bmtk/simulator/bionet/schemas/csv_node_types_internal.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/schemas
copying bmtk/simulator/bionet/schemas/csv_nodes_external.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/schemas
copying bmtk/simulator/bionet/schemas/csv_nodes_internal.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/bionet/schemas
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core/sonata_schemas
copying bmtk/simulator/core/sonata_schemas/config_schema.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core/sonata_schemas
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
copying bmtk/simulator/filternet/lgnmodel/cell_metrics/sOFF_cell_data.csv -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
copying bmtk/simulator/filternet/lgnmodel/cell_metrics/sON_cell_data.csv -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
copying bmtk/simulator/filternet/lgnmodel/cell_metrics/sus_sus_cells_v3.csv -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
copying bmtk/simulator/filternet/lgnmodel/cell_metrics/tOFF_cell_data.csv -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
copying bmtk/simulator/filternet/lgnmodel/cell_metrics/tON_cell_data.csv -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
copying bmtk/simulator/filternet/lgnmodel/cell_metrics/trans_sus_cells_v3.csv -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
copying bmtk/simulator/core/modules/ndx-aibs-ecephys.extension.yaml -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core/modules
copying bmtk/simulator/core/modules/ndx-aibs-ecephys.namespace.yaml -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core/modules
I: pybuild base:311: /usr/bin/python3 setup.py build
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require'
warnings.warn(msg)
running build
running build_py
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk
copying bmtk/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/analyzer
copying bmtk/analyzer/spikes_analyzer.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/analyzer
copying bmtk/analyzer/firing_rates.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/analyzer
copying bmtk/analyzer/utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/analyzer
copying bmtk/analyzer/ecp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/analyzer
copying bmtk/analyzer/edges.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/analyzer
copying bmtk/analyzer/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/analyzer
copying bmtk/analyzer/compartment.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/analyzer
copying bmtk/analyzer/spike_trains.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/analyzer
copying bmtk/analyzer/io_tools.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/analyzer
copying bmtk/analyzer/cell_vars.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/analyzer
copying bmtk/analyzer/spikes_loader.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/analyzer
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils
copying bmtk/utils/sim_setup.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils
copying bmtk/utils/hdf5_helper.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils
copying bmtk/utils/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils
copying bmtk/utils/lazy_property.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder
copying bmtk/builder/node_set.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder
copying bmtk/builder/builder_utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder
copying bmtk/builder/id_generator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder
copying bmtk/builder/network_builder.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder
copying bmtk/builder/edge.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder
copying bmtk/builder/networks.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder
copying bmtk/builder/index_builders.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder
copying bmtk/builder/node.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder
copying bmtk/builder/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder
copying bmtk/builder/connection_map.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder
copying bmtk/builder/iterator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder
copying bmtk/builder/node_pool.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder
copying bmtk/builder/connector.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder
copying bmtk/builder/functor_cache.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator
copying bmtk/simulator/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata
copying bmtk/utils/sonata/file.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata
copying bmtk/utils/sonata/utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata
copying bmtk/utils/sonata/edge.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata
copying bmtk/utils/sonata/population.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata
copying bmtk/utils/sonata/file_root.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata
copying bmtk/utils/sonata/column_property.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata
copying bmtk/utils/sonata/node.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata
copying bmtk/utils/sonata/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata
copying bmtk/utils/sonata/edge_stats.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata
copying bmtk/utils/sonata/types_table.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata
copying bmtk/utils/sonata/group.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/compile_mechanisms
copying bmtk/utils/compile_mechanisms/compile_mechanisms.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/compile_mechanisms
copying bmtk/utils/compile_mechanisms/__main__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/compile_mechanisms
copying bmtk/utils/compile_mechanisms/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/compile_mechanisms
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/cell_types_db
copying bmtk/utils/cell_types_db/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/cell_types_db
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports
copying bmtk/utils/reports/current_writer.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports
copying bmtk/utils/reports/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/create_environment
copying bmtk/utils/create_environment/create_environment.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/create_environment
copying bmtk/utils/create_environment/env_builder.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/create_environment
copying bmtk/utils/create_environment/__main__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/create_environment
copying bmtk/utils/create_environment/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/create_environment
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/io
copying bmtk/utils/io/firing_rates.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/io
copying bmtk/utils/io/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/io
copying bmtk/utils/io/spike_trains.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/io
copying bmtk/utils/io/ioutils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/io
copying bmtk/utils/io/cell_vars.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/io
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata/config
copying bmtk/utils/sonata/config/sonata_config.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata/config
copying bmtk/utils/sonata/config/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata/config
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/spike_trains
copying bmtk/utils/reports/spike_trains/spikes_file_writers.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/spike_trains
copying bmtk/utils/reports/spike_trains/spike_train_readers.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/spike_trains
copying bmtk/utils/reports/spike_trains/core.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/spike_trains
copying bmtk/utils/reports/spike_trains/spike_trains_api.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/spike_trains
copying bmtk/utils/reports/spike_trains/stats.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/spike_trains
copying bmtk/utils/reports/spike_trains/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/spike_trains
copying bmtk/utils/reports/spike_trains/spike_trains.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/spike_trains
copying bmtk/utils/reports/spike_trains/plotting.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/spike_trains
copying bmtk/utils/reports/spike_trains/spike_train_buffer.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/spike_trains
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/compartment
copying bmtk/utils/reports/compartment/core.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/compartment
copying bmtk/utils/reports/compartment/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/compartment
copying bmtk/utils/reports/compartment/compartment_writer.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/compartment
copying bmtk/utils/reports/compartment/plotting.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/compartment
copying bmtk/utils/reports/compartment/compartment_report.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/compartment
copying bmtk/utils/reports/compartment/compartment_reader.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/reports/compartment
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/network_adaptors
copying bmtk/builder/network_adaptors/dm_network.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/network_adaptors
copying bmtk/builder/network_adaptors/edge_props_table.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/network_adaptors
copying bmtk/builder/network_adaptors/nxnetwork.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/network_adaptors
copying bmtk/builder/network_adaptors/network.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/network_adaptors
copying bmtk/builder/network_adaptors/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/network_adaptors
copying bmtk/builder/network_adaptors/dm_network_orig.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/network_adaptors
copying bmtk/builder/network_adaptors/edges_collator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/network_adaptors
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/bionet
copying bmtk/builder/bionet/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/bionet
copying bmtk/builder/bionet/swc_reader.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/bionet
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/edges_sorter
copying bmtk/builder/edges_sorter/memory_sorter.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/edges_sorter
copying bmtk/builder/edges_sorter/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/edges_sorter
copying bmtk/builder/edges_sorter/merge_sorter.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/edges_sorter
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/auxi
copying bmtk/builder/auxi/edge_connectors.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/auxi
copying bmtk/builder/auxi/node_params.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/auxi
copying bmtk/builder/auxi/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/auxi
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet
copying bmtk/simulator/pointnet/utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet
copying bmtk/simulator/pointnet/pyfunction_cache.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet
copying bmtk/simulator/pointnet/gids.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet
copying bmtk/simulator/pointnet/nest_utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet
copying bmtk/simulator/pointnet/config.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet
copying bmtk/simulator/pointnet/property_map.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet
copying bmtk/simulator/pointnet/sonata_adaptors.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet
copying bmtk/simulator/pointnet/glif_utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet
copying bmtk/simulator/pointnet/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet
copying bmtk/simulator/pointnet/io_tools.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet
copying bmtk/simulator/pointnet/pointnetwork.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet
copying bmtk/simulator/pointnet/pointsimulator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/cell_models.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/auditory_processing.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/filtersimulator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/pyfunction_cache.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/cell.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/config.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/filternetwork.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/sonata_adaptors.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/transfer_functions.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/filters.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet
copying bmtk/simulator/filternet/io_tools.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/popnet
copying bmtk/simulator/popnet/utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/popnet
copying bmtk/simulator/popnet/popnetwork.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/popnet
copying bmtk/simulator/popnet/popnode.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/popnet
copying bmtk/simulator/popnet/config.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/popnet
copying bmtk/simulator/popnet/popedge.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/popnet
copying bmtk/simulator/popnet/sonata_adaptors.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/popnet
copying bmtk/simulator/popnet/popsimulator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/popnet
copying bmtk/simulator/popnet/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/popnet
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/utils
copying bmtk/simulator/utils/simulation_reports.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/utils
copying bmtk/simulator/utils/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/utils
copying bmtk/simulator/utils/simulation_inputs.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/utils
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/utils.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/iclamp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/pyfunction_cache.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/gids.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/cell.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/config.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/seclamp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/sonata_adaptors.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/nrn.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/morphology.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/bionetwork.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/virtualcell.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/io_tools.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/pointsomacell.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/biosimulator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/pointprocesscell.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/biocell.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/nml_reader.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core
copying bmtk/simulator/core/simulation_config_validator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core
copying bmtk/simulator/core/network_reader.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core
copying bmtk/simulator/core/pyfunction_cache.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core
copying bmtk/simulator/core/edge_population.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core
copying bmtk/simulator/core/simulator.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core
copying bmtk/simulator/core/simulator_network.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core
copying bmtk/simulator/core/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core
copying bmtk/simulator/core/simulation_config.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core
copying bmtk/simulator/core/io_tools.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core
copying bmtk/simulator/core/node_sets.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core
copying bmtk/simulator/core/node_population.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core
copying bmtk/simulator/core/graph.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet/modules
copying bmtk/simulator/pointnet/modules/multimeter_reporter.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet/modules
copying bmtk/simulator/pointnet/modules/spikes_inputs.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet/modules
copying bmtk/simulator/pointnet/modules/iclamp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet/modules
copying bmtk/simulator/pointnet/modules/sim_module.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet/modules
copying bmtk/simulator/pointnet/modules/ecephys_module.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet/modules
copying bmtk/simulator/pointnet/modules/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet/modules
copying bmtk/simulator/pointnet/modules/record_spikes.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet/modules
copying bmtk/simulator/pointnet/modules/weight_recorder.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet/modules
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet/default_setters
copying bmtk/simulator/pointnet/default_setters/cell_models.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet/default_setters
copying bmtk/simulator/pointnet/default_setters/synapse_models.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet/default_setters
copying bmtk/simulator/pointnet/default_setters/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet/default_setters
copying bmtk/simulator/pointnet/default_setters/synaptic_weights.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/pointnet/default_setters
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/util_fns.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/cellmetrics.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/lnunit.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/cellmodel.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/singleunitcell.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/temporalfilter.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/linearfilter.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/lattice_unit_constructor.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/fitfuns.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/lgnmodel1.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/cursor.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/transferfunction.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/poissongeneration.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/kernel.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/movie.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/gaborfilter.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/utilities.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/waveletfilter.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/make_cell_list.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
copying bmtk/simulator/filternet/lgnmodel/spatialfilter.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/modules
copying bmtk/simulator/filternet/modules/create_spikes.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/modules
copying bmtk/simulator/filternet/modules/base.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/modules
copying bmtk/simulator/filternet/modules/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/modules
copying bmtk/simulator/filternet/modules/record_rates.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/modules
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/default_setters
copying bmtk/simulator/filternet/default_setters/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/default_setters
copying bmtk/simulator/filternet/default_setters/cell_loaders.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/default_setters
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/comsol.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/ecp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/iclamp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/seclamp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/sim_module.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/xstim_waveforms.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/xstim.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/ecephys_module.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/record_netcons.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/record_clamp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/record_spikes.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/record_cellvars.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/modules
copying bmtk/simulator/bionet/modules/save_synapses.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/modules
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/default_setters
copying bmtk/simulator/bionet/default_setters/cell_models.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/default_setters
copying bmtk/simulator/bionet/default_setters/synapse_models.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/default_setters
copying bmtk/simulator/bionet/default_setters/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/default_setters
copying bmtk/simulator/bionet/default_setters/synaptic_weights.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/default_setters
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core/sonata_reader
copying bmtk/simulator/core/sonata_reader/network_reader.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core/sonata_reader
copying bmtk/simulator/core/sonata_reader/node_adaptor.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core/sonata_reader
copying bmtk/simulator/core/sonata_reader/edge_adaptor.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core/sonata_reader
copying bmtk/simulator/core/sonata_reader/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core/sonata_reader
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core/modules
copying bmtk/simulator/core/modules/iclamp.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core/modules
copying bmtk/simulator/core/modules/ecephys_module.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core/modules
copying bmtk/simulator/core/modules/__init__.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core/modules
copying bmtk/simulator/core/modules/simulator_module.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core/modules
running egg_info
writing bmtk.egg-info/PKG-INFO
writing dependency_links to bmtk.egg-info/dependency_links.txt
writing requirements to bmtk.egg-info/requires.txt
writing top-level names to bmtk.egg-info/top_level.txt
reading manifest file 'bmtk.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.txt' under directory 'bmtk'
warning: no files found matching '*.cfg' under directory 'bmtk'
adding license file 'LICENSE.txt'
writing manifest file 'bmtk.egg-info/SOURCES.txt'
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.simulator.bionet.default_templates' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.simulator.bionet.default_templates' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.simulator.bionet.default_templates' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.simulator.bionet.default_templates' to be distributed and are
already explicitly excluding 'bmtk.simulator.bionet.default_templates' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.simulator.bionet.import3d' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.simulator.bionet.import3d' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.simulator.bionet.import3d' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.simulator.bionet.import3d' to be distributed and are
already explicitly excluding 'bmtk.simulator.bionet.import3d' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.simulator.bionet.schemas' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.simulator.bionet.schemas' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.simulator.bionet.schemas' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.simulator.bionet.schemas' to be distributed and are
already explicitly excluding 'bmtk.simulator.bionet.schemas' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.simulator.core.sonata_schemas' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.simulator.core.sonata_schemas' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.simulator.core.sonata_schemas' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.simulator.core.sonata_schemas' to be distributed and are
already explicitly excluding 'bmtk.simulator.core.sonata_schemas' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.simulator.filternet.lgnmodel.cell_metrics' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.simulator.filternet.lgnmodel.cell_metrics' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.simulator.filternet.lgnmodel.cell_metrics' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.simulator.filternet.lgnmodel.cell_metrics' to be distributed and are
already explicitly excluding 'bmtk.simulator.filternet.lgnmodel.cell_metrics' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.bionet' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.bionet' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.bionet' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.bionet' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.bionet' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.bionet.biophysical_neuron_models' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.bionet.biophysical_neuron_models' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.bionet.biophysical_neuron_models' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.bionet.biophysical_neuron_models' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.bionet.biophysical_neuron_models' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.bionet.filter_models' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.bionet.filter_models' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.bionet.filter_models' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.bionet.filter_models' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.bionet.filter_models' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.bionet.mechanisms.modfiles' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.bionet.mechanisms.modfiles' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.bionet.mechanisms.modfiles' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.bionet.mechanisms.modfiles' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.bionet.mechanisms.modfiles' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.bionet.morphologies' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.bionet.morphologies' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.bionet.morphologies' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.bionet.morphologies' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.bionet.morphologies' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.bionet.point_neuron_models' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.bionet.point_neuron_models' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.bionet.point_neuron_models' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.bionet.point_neuron_models' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.bionet.point_neuron_models' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.bionet.synaptic_models' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.bionet.synaptic_models' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.bionet.synaptic_models' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.bionet.synaptic_models' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.bionet.synaptic_models' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.bionet.templates' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.bionet.templates' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.bionet.templates' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.bionet.templates' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.bionet.templates' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.filternet' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.filternet' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.filternet' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.filternet' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.filternet' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.filternet.filter_models' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.filternet.filter_models' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.filternet.filter_models' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.filternet.filter_models' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.filternet.filter_models' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.pointnet' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.pointnet' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.pointnet' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.pointnet' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.pointnet' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.pointnet.filter_models' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.pointnet.filter_models' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.pointnet.filter_models' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.pointnet.filter_models' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.pointnet.filter_models' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.pointnet.point_neuron_models' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.pointnet.point_neuron_models' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.pointnet.point_neuron_models' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.pointnet.point_neuron_models' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.pointnet.point_neuron_models' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.pointnet.synaptic_models' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.pointnet.synaptic_models' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.pointnet.synaptic_models' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.pointnet.synaptic_models' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.pointnet.synaptic_models' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.popnet' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.popnet' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.popnet' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.popnet' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.popnet' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.popnet.population_models' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.popnet.population_models' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.popnet.population_models' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.popnet.population_models' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.popnet.population_models' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'bmtk.utils.scripts.popnet.synaptic_models' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'bmtk.utils.scripts.popnet.synaptic_models' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'bmtk.utils.scripts.popnet.synaptic_models' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'bmtk.utils.scripts.popnet.synaptic_models' to be distributed and are
already explicitly excluding 'bmtk.utils.scripts.popnet.synaptic_models' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts
copying bmtk/utils/scripts/sonata.circuit_config.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts
copying bmtk/utils/scripts/sonata.simulation_config.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet
copying bmtk/utils/scripts/bionet/default_config.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet
copying bmtk/utils/scripts/bionet/run_bionet.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
copying bmtk/utils/scripts/bionet/biophysical_neuron_models/318331342_fit.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
copying bmtk/utils/scripts/bionet/biophysical_neuron_models/472363762_fit.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
copying bmtk/utils/scripts/bionet/biophysical_neuron_models/472912177_fit.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
copying bmtk/utils/scripts/bionet/biophysical_neuron_models/473862421_fit.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
copying bmtk/utils/scripts/bionet/biophysical_neuron_models/473863035_fit.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
copying bmtk/utils/scripts/bionet/biophysical_neuron_models/473863510_fit.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
copying bmtk/utils/scripts/bionet/biophysical_neuron_models/485184849_fit.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/biophysical_neuron_models
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/sOFF_TF1.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/sOFF_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/sOFF_TF2.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/sOFF_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/sOFF_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/sON_TF1.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/sON_TF2.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/sON_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/sON_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/tOFF_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/tOFF_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/tOFF_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/tON_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/tON_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/tON_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
copying bmtk/utils/scripts/bionet/filter_models/tON_TF8_demo.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/filter_models
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/CaDynamics.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Ca_HVA.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Ca_LVA.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Ih.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Im.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Im_v2.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/K_P.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/K_T.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Kd.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Kv2like.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Kv3_1.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/NaTa.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/NaTs.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/NaV.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/Nap.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/SK.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
copying bmtk/utils/scripts/bionet/mechanisms/modfiles/vecevent.mod -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/mechanisms/modfiles
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/morphologies
copying bmtk/utils/scripts/bionet/morphologies/Nr5a1_471087815_m.swc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/morphologies
copying bmtk/utils/scripts/bionet/morphologies/Pvalb_469628681_m.swc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/morphologies
copying bmtk/utils/scripts/bionet/morphologies/Pvalb_470522102_m.swc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/morphologies
copying bmtk/utils/scripts/bionet/morphologies/Rorb_325404214_m.swc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/morphologies
copying bmtk/utils/scripts/bionet/morphologies/Scnn1a_473845048_m.swc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/morphologies
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/point_neuron_models
copying bmtk/utils/scripts/bionet/point_neuron_models/IntFire1_exc_1.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/point_neuron_models
copying bmtk/utils/scripts/bionet/point_neuron_models/IntFire1_inh_1.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/point_neuron_models
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/synaptic_models
copying bmtk/utils/scripts/bionet/synaptic_models/AMPA_ExcToExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/synaptic_models
copying bmtk/utils/scripts/bionet/synaptic_models/AMPA_ExcToInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/synaptic_models
copying bmtk/utils/scripts/bionet/synaptic_models/GABA_InhToExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/synaptic_models
copying bmtk/utils/scripts/bionet/synaptic_models/GABA_InhToInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/synaptic_models
copying bmtk/utils/scripts/bionet/synaptic_models/instantaneousExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/synaptic_models
copying bmtk/utils/scripts/bionet/synaptic_models/instantaneousInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/synaptic_models
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/templates
copying bmtk/utils/scripts/bionet/templates/BioAllen_old.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/templates
copying bmtk/utils/scripts/bionet/templates/BioAxonStub.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/templates
copying bmtk/utils/scripts/bionet/templates/Biophys1.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/bionet/templates
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet
copying bmtk/utils/scripts/filternet/run_filternet.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/sOFF_TF1.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/sOFF_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/sOFF_TF2.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/sOFF_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/sOFF_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/sON_TF1.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/sON_TF2.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/sON_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/sON_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/tOFF_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/tOFF_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/tOFF_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/tON_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/tON_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/tON_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
copying bmtk/utils/scripts/filternet/filter_models/tON_TF8_demo.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/filternet/filter_models
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet
copying bmtk/utils/scripts/pointnet/run_pointnet.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/sOFF_TF1.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/sOFF_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/sOFF_TF2.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/sOFF_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/sOFF_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/sON_TF1.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/sON_TF2.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/sON_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/sON_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/tOFF_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/tOFF_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/tOFF_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/tON_TF15.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/tON_TF4.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/tON_TF8.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
copying bmtk/utils/scripts/pointnet/filter_models/tON_TF8_demo.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/filter_models
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/point_neuron_models
copying bmtk/utils/scripts/pointnet/point_neuron_models/472363762_point.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/point_neuron_models
copying bmtk/utils/scripts/pointnet/point_neuron_models/472912177_point.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/point_neuron_models
copying bmtk/utils/scripts/pointnet/point_neuron_models/473862421_point.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/point_neuron_models
copying bmtk/utils/scripts/pointnet/point_neuron_models/473863035_point.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/point_neuron_models
copying bmtk/utils/scripts/pointnet/point_neuron_models/473863510_point.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/point_neuron_models
copying bmtk/utils/scripts/pointnet/point_neuron_models/IntFire1_exc_point.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/point_neuron_models
copying bmtk/utils/scripts/pointnet/point_neuron_models/IntFire1_inh_point.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/point_neuron_models
copying bmtk/utils/scripts/pointnet/point_neuron_models/filter_point.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/point_neuron_models
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/synaptic_models
copying bmtk/utils/scripts/pointnet/synaptic_models/ExcToExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/synaptic_models
copying bmtk/utils/scripts/pointnet/synaptic_models/ExcToInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/synaptic_models
copying bmtk/utils/scripts/pointnet/synaptic_models/InhToExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/synaptic_models
copying bmtk/utils/scripts/pointnet/synaptic_models/InhToInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/synaptic_models
copying bmtk/utils/scripts/pointnet/synaptic_models/instantaneousExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/synaptic_models
copying bmtk/utils/scripts/pointnet/synaptic_models/instantaneousInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/pointnet/synaptic_models
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/popnet
copying bmtk/utils/scripts/popnet/run_popnet.py -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/popnet
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/popnet/population_models
copying bmtk/utils/scripts/popnet/population_models/exc_model.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/popnet/population_models
copying bmtk/utils/scripts/popnet/population_models/inh_model.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/popnet/population_models
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/popnet/synaptic_models
copying bmtk/utils/scripts/popnet/synaptic_models/ExcToExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/popnet/synaptic_models
copying bmtk/utils/scripts/popnet/synaptic_models/ExcToInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/popnet/synaptic_models
copying bmtk/utils/scripts/popnet/synaptic_models/InhToExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/popnet/synaptic_models
copying bmtk/utils/scripts/popnet/synaptic_models/InhToInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/popnet/synaptic_models
copying bmtk/utils/scripts/popnet/synaptic_models/input_ExcToExc.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/popnet/synaptic_models
copying bmtk/utils/scripts/popnet/synaptic_models/input_ExcToInh.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/scripts/popnet/synaptic_models
copying bmtk/utils/sonata/config/config_schema.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata/config
copying bmtk/simulator/bionet/README.md -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
copying bmtk/simulator/bionet/import3d.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/default_templates
copying bmtk/simulator/bionet/default_templates/BioAxonStub.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/default_templates
copying bmtk/simulator/bionet/default_templates/Biophys1.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/default_templates
copying bmtk/simulator/bionet/default_templates/advance.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/default_templates
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/import3d
copying bmtk/simulator/bionet/import3d/import3d_gui.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/import3d
copying bmtk/simulator/bionet/import3d/import3d_sec.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/import3d
copying bmtk/simulator/bionet/import3d/read_morphml.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/import3d
copying bmtk/simulator/bionet/import3d/read_nlcda.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/import3d
copying bmtk/simulator/bionet/import3d/read_nlcda3.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/import3d
copying bmtk/simulator/bionet/import3d/read_nts.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/import3d
copying bmtk/simulator/bionet/import3d/read_swc.hoc -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/import3d
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/schemas
copying bmtk/simulator/bionet/schemas/config_schema.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/schemas
copying bmtk/simulator/bionet/schemas/csv_edge_types.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/schemas
copying bmtk/simulator/bionet/schemas/csv_node_types_external.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/schemas
copying bmtk/simulator/bionet/schemas/csv_node_types_internal.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/schemas
copying bmtk/simulator/bionet/schemas/csv_nodes_external.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/schemas
copying bmtk/simulator/bionet/schemas/csv_nodes_internal.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/bionet/schemas
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core/sonata_schemas
copying bmtk/simulator/core/sonata_schemas/config_schema.json -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core/sonata_schemas
creating /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
copying bmtk/simulator/filternet/lgnmodel/cell_metrics/sOFF_cell_data.csv -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
copying bmtk/simulator/filternet/lgnmodel/cell_metrics/sON_cell_data.csv -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
copying bmtk/simulator/filternet/lgnmodel/cell_metrics/sus_sus_cells_v3.csv -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
copying bmtk/simulator/filternet/lgnmodel/cell_metrics/tOFF_cell_data.csv -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
copying bmtk/simulator/filternet/lgnmodel/cell_metrics/tON_cell_data.csv -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
copying bmtk/simulator/filternet/lgnmodel/cell_metrics/trans_sus_cells_v3.csv -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel/cell_metrics
copying bmtk/simulator/core/modules/ndx-aibs-ecephys.extension.yaml -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core/modules
copying bmtk/simulator/core/modules/ndx-aibs-ecephys.namespace.yaml -> /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core/modules
sphinx-apidoc -f -o docs/autodocs/source/bmtk/ bmtk
PYTHONPATH=. python3 -m sphinx -N -bhtml docs/autodocs/source/ build/html # HTML generator
Running Sphinx v8.1.3
loading translations [en]... done
making output directory... done
WARNING: html_static_path entry '/usr/share/javascript/requirejs/require.min.js' does not exist
Converting `source_suffix = ['.rst', '.md']` to `source_suffix = {'.rst': 'restructuredtext', '.md': 'restructuredtext'}`.
[autosummary] generating autosummary for: ad_tutorials.rst, analyzer.rst, bionet.rst, bionet_config.rst, bionet_tutorial.rst, bmtk/bmtk.analyzer.rst, bmtk/bmtk.builder.auxi.rst, bmtk/bmtk.builder.bionet.rst, bmtk/bmtk.builder.edges_sorter.rst, bmtk/bmtk.builder.network_adaptors.rst, ..., tutorial_filter_models.ipynb, tutorial_multi_pop.ipynb, tutorial_pointnet_modeling.ipynb, tutorial_population_modeling.ipynb, tutorial_single_cell_clamped.ipynb, tutorial_single_cell_syn.ipynb, tutorial_single_pop.ipynb, tutorial_spike_trains_refractory.ipynb, tutorials.rst, workshop.rst
Matplotlib created a temporary cache directory at /tmp/matplotlib-k2ps2yxd because the default path (/sbuild-nonexistent/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
WARNING: Failed to import bmtk.tests.utils.reports.spike_trains.benchmark_spikes_buffers.
* AttributeError: module 'bmtk.tests.utils.reports.spike_trains' has no attribute 'benchmark_spikes_buffers'
* ModuleNotFoundError: No module named 'memory_profiler'
numprocs=1
WARNING: Failed to import bmtk.simulator.popnet.config.
* AttributeError: module 'bmtk.simulator' has no attribute 'popnet'
* ModuleNotFoundError: No module named 'dipde'
WARNING: Failed to import bmtk.simulator.popnet.popedge.
* AttributeError: module 'bmtk.simulator' has no attribute 'popnet'
* ModuleNotFoundError: No module named 'dipde'
WARNING: Failed to import bmtk.simulator.popnet.popnetwork.
* AttributeError: module 'bmtk.simulator' has no attribute 'popnet'
* ModuleNotFoundError: No module named 'dipde'
WARNING: Failed to import bmtk.simulator.popnet.popnode.
* AttributeError: module 'bmtk.simulator' has no attribute 'popnet'
* ModuleNotFoundError: No module named 'dipde'
WARNING: Failed to import bmtk.simulator.popnet.popsimulator.
* AttributeError: module 'bmtk.simulator' has no attribute 'popnet'
* ModuleNotFoundError: No module named 'dipde'
WARNING: Failed to import bmtk.simulator.popnet.
* AttributeError: module 'bmtk.simulator' has no attribute 'popnet'
* ModuleNotFoundError: No module named 'dipde'
NEURON mechanisms not found in /build/reproducible-path/bmtk-1.1.1+ds/bmtk/tests/simulator/bionet/components/mechanisms.
NEURON mechanisms not found in components/mechanisms.
NEURON mechanisms not found in components/mechanisms.
NEURON mechanisms not found in bmtk/tests/simulator/bionet/components/mechanisms.
Writing evaluated template result to /build/reproducible-path/bmtk-1.1.1+ds/build/html/_static/nbsphinx-code-cells.css
building [mo]: targets for 0 po files that are out of date
writing output...
building [html]: targets for 81 source files that are out of date
updating environment: [new config] 81 added, 0 changed, 0 removed
reading sources... [ 1%] ad_tutorials
reading sources... [ 2%] analyzer
reading sources... [ 4%] bionet
reading sources... [ 5%] bionet_config
reading sources... [ 6%] bionet_tutorial
reading sources... [ 7%] bmtk/bmtk
reading sources... [ 9%] bmtk/bmtk.analyzer
reading sources... [ 10%] bmtk/bmtk.builder
reading sources... [ 11%] bmtk/bmtk.builder.auxi
reading sources... [ 12%] bmtk/bmtk.builder.bionet
reading sources... [ 14%] bmtk/bmtk.builder.edges_sorter
reading sources... [ 15%] bmtk/bmtk.builder.network_adaptors
reading sources... [ 16%] bmtk/bmtk.simulator
reading sources... [ 17%] bmtk/bmtk.simulator.bionet
reading sources... [ 19%] bmtk/bmtk.simulator.bionet.default_setters
reading sources... [ 20%] bmtk/bmtk.simulator.bionet.modules
reading sources... [ 21%] bmtk/bmtk.simulator.core
reading sources... [ 22%] bmtk/bmtk.simulator.core.modules
/usr/lib/python3/dist-packages/numpydoc/docscrape.py:421: UserWarning: Unknown section Input Parameters: in the docstring of IClampMod in /build/reproducible-path/bmtk-1.1.1+ds/bmtk/simulator/core/modules/iclamp.py.
self[section] = content
reading sources... [ 23%] bmtk/bmtk.simulator.core.sonata_reader
reading sources... [ 25%] bmtk/bmtk.simulator.filternet
reading sources... [ 26%] bmtk/bmtk.simulator.filternet.default_setters
reading sources... [ 27%] bmtk/bmtk.simulator.filternet.lgnmodel
reading sources... [ 28%] bmtk/bmtk.simulator.filternet.modules
reading sources... [ 30%] bmtk/bmtk.simulator.pointnet
reading sources... [ 31%] bmtk/bmtk.simulator.pointnet.default_setters
reading sources... [ 32%] bmtk/bmtk.simulator.pointnet.modules
reading sources... [ 33%] bmtk/bmtk.simulator.popnet
reading sources... [ 35%] bmtk/bmtk.simulator.utils
reading sources... [ 36%] bmtk/bmtk.tests
reading sources... [ 37%] bmtk/bmtk.tests.builder
reading sources... [ 38%] bmtk/bmtk.tests.builder.auxi
reading sources... [ 40%] bmtk/bmtk.tests.builder.bionet
reading sources... [ 41%] bmtk/bmtk.tests.simulator
reading sources... [ 42%] bmtk/bmtk.tests.simulator.bionet
reading sources... [ 43%] bmtk/bmtk.tests.simulator.pointnet
reading sources... [ 44%] bmtk/bmtk.tests.simulator.popnet
reading sources... [ 46%] bmtk/bmtk.tests.utils
reading sources... [ 47%] bmtk/bmtk.tests.utils.reports
reading sources... [ 48%] bmtk/bmtk.tests.utils.reports.compartment
reading sources... [ 49%] bmtk/bmtk.tests.utils.reports.spike_trains
reading sources... [ 51%] bmtk/bmtk.tests.utils.sonata
reading sources... [ 52%] bmtk/bmtk.utils
reading sources... [ 53%] bmtk/bmtk.utils.cell_types_db
reading sources... [ 54%] bmtk/bmtk.utils.compile_mechanisms
reading sources... [ 56%] bmtk/bmtk.utils.create_environment
reading sources... [ 57%] bmtk/bmtk.utils.io
reading sources... [ 58%] bmtk/bmtk.utils.reports
reading sources... [ 59%] bmtk/bmtk.utils.reports.compartment
reading sources... [ 60%] bmtk/bmtk.utils.reports.spike_trains
reading sources... [ 62%] bmtk/bmtk.utils.sonata
reading sources... [ 63%] bmtk/bmtk.utils.sonata.config
reading sources... [ 64%] bmtk/modules
reading sources... [ 65%] builder
reading sources... [ 67%] contributors
reading sources... [ 68%] current_clamps
reading sources... [ 69%] ecephys_probe
reading sources... [ 70%] examples
reading sources... [ 72%] filternet
reading sources... [ 73%] how_to_cite
reading sources... [ 74%] index
reading sources... [ 75%] installation
reading sources... [ 77%] network_file_formats
reading sources... [ 78%] pointnet
reading sources... [ 79%] popnet
reading sources... [ 80%] registration
reading sources... [ 81%] simulators
reading sources... [ 83%] tutorial_NetworkBuilder_Intro
reading sources... [ 84%] tutorial_auditory_filternet
reading sources... [ 85%] tutorial_bionet_disconnected_sims
reading sources... [ 86%] tutorial_cell_placement
reading sources... [ 88%] tutorial_dynamic_synapses
reading sources... [ 89%] tutorial_filter_models
reading sources... [ 90%] tutorial_multi_pop
reading sources... [ 91%] tutorial_pointnet_modeling
reading sources... [ 93%] tutorial_population_modeling
reading sources... [ 94%] tutorial_single_cell_clamped
reading sources... [ 95%] tutorial_single_cell_syn
reading sources... [ 96%] tutorial_single_pop
reading sources... [ 98%] tutorial_spike_trains_refractory
reading sources... [ 99%] tutorials
reading sources... [100%] workshop
/build/reproducible-path/bmtk-1.1.1+ds/docs/autodocs/source/bionet.rst:2: WARNING: Duplicate explicit target name: "documentation". [docutils]
/build/reproducible-path/bmtk-1.1.1+ds/bmtk/simulator/bionet/default_setters/cell_models.py:docstring of bmtk.simulator.bionet.default_setters.cell_models.loadHOC:2: WARNING: Inline emphasis start-string without end-string. [docutils]
/build/reproducible-path/bmtk-1.1.1+ds/bmtk/simulator/bionet/modules/comsol.py:docstring of bmtk.simulator.bionet.modules.comsol.ComsolMod.initialize:4: ERROR: Unexpected indentation. [docutils]
/build/reproducible-path/bmtk-1.1.1+ds/bmtk/simulator/bionet/modules/comsol.py:docstring of bmtk.simulator.bionet.modules.comsol.ComsolMod.initialize:7: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils]
/build/reproducible-path/bmtk-1.1.1+ds/bmtk/simulator/bionet/modules/comsol.py:docstring of bmtk.simulator.bionet.modules.comsol.ComsolMod.initialize:11: ERROR: Unexpected indentation. [docutils]
/build/reproducible-path/bmtk-1.1.1+ds/bmtk/simulator/bionet/modules/comsol.py:docstring of bmtk.simulator.bionet.modules.comsol.ComsolMod.step:4: ERROR: Unexpected indentation. [docutils]
/build/reproducible-path/bmtk-1.1.1+ds/bmtk/simulator/bionet/modules/comsol.py:docstring of bmtk.simulator.bionet.modules.comsol.ComsolMod.step:10: ERROR: Unexpected indentation. [docutils]
No module named 'dipde' [autodoc.import_object]
No module named 'dipde' [autodoc.import_object]
No module named 'dipde' [autodoc.import_object]
No module named 'dipde' [autodoc.import_object]
No module named 'dipde' [autodoc.import_object]
No module named 'dipde' [autodoc.import_object]
No module named 'memory_profiler' [autodoc.import_object]
/build/reproducible-path/bmtk-1.1.1+ds/docs/autodocs/source/how_to_cite.rst:32: WARNING: Line block ends without a blank line. [docutils]
/build/reproducible-path/bmtk-1.1.1+ds/docs/autodocs/source/index.rst:8: WARNING: Duplicate explicit target name: "link". [docutils]
/build/reproducible-path/bmtk-1.1.1+ds/docs/autodocs/source/installation.rst:2: WARNING: Duplicate explicit target name: "here". [docutils]
/build/reproducible-path/bmtk-1.1.1+ds/docs/autodocs/source/pointnet.rst:2: WARNING: Duplicate explicit target name: "documentation". [docutils]
looking for now-outdated files... none found
pickling environment... done
checking consistency... /build/reproducible-path/bmtk-1.1.1+ds/docs/autodocs/source/bmtk/modules.rst: WARNING: document isn't included in any toctree
/build/reproducible-path/bmtk-1.1.1+ds/docs/autodocs/source/bmtk/bmtk.rst: document is referenced in multiple toctrees: ['bmtk/modules', 'index'], selecting: index <- bmtk/bmtk
done
preparing documents... done
copying assets...
copying downloadable files... [100%] ../../_static/2022-07-Allen-Institute-Software-Modeling-Workshop.pdf
copying static files...
Writing evaluated template result to /build/reproducible-path/bmtk-1.1.1+ds/build/html/_static/documentation_options.js
Writing evaluated template result to /build/reproducible-path/bmtk-1.1.1+ds/build/html/_static/basic.css
Writing evaluated template result to /build/reproducible-path/bmtk-1.1.1+ds/build/html/_static/language_data.js
Writing evaluated template result to /build/reproducible-path/bmtk-1.1.1+ds/build/html/_static/aibs_sphinx.css
Writing evaluated template result to /build/reproducible-path/bmtk-1.1.1+ds/build/html/_static/aibs_sphinx.css
copying static files: done
copying extra files...
copying extra files: done
copying assets: done
writing output... [ 1%] ad_tutorials
writing output... [ 2%] analyzer
writing output... [ 4%] bionet
writing output... [ 5%] bionet_config
writing output... [ 6%] bionet_tutorial
writing output... [ 7%] bmtk/bmtk
writing output... [ 9%] bmtk/bmtk.analyzer
writing output... [ 10%] bmtk/bmtk.builder
writing output... [ 11%] bmtk/bmtk.builder.auxi
writing output... [ 12%] bmtk/bmtk.builder.bionet
writing output... [ 14%] bmtk/bmtk.builder.edges_sorter
writing output... [ 15%] bmtk/bmtk.builder.network_adaptors
writing output... [ 16%] bmtk/bmtk.simulator
writing output... [ 17%] bmtk/bmtk.simulator.bionet
writing output... [ 19%] bmtk/bmtk.simulator.bionet.default_setters
writing output... [ 20%] bmtk/bmtk.simulator.bionet.modules
writing output... [ 21%] bmtk/bmtk.simulator.core
writing output... [ 22%] bmtk/bmtk.simulator.core.modules
writing output... [ 23%] bmtk/bmtk.simulator.core.sonata_reader
writing output... [ 25%] bmtk/bmtk.simulator.filternet
writing output... [ 26%] bmtk/bmtk.simulator.filternet.default_setters
writing output... [ 27%] bmtk/bmtk.simulator.filternet.lgnmodel
writing output... [ 28%] bmtk/bmtk.simulator.filternet.modules
writing output... [ 30%] bmtk/bmtk.simulator.pointnet
writing output... [ 31%] bmtk/bmtk.simulator.pointnet.default_setters
writing output... [ 32%] bmtk/bmtk.simulator.pointnet.modules
writing output... [ 33%] bmtk/bmtk.simulator.popnet
writing output... [ 35%] bmtk/bmtk.simulator.utils
writing output... [ 36%] bmtk/bmtk.tests
writing output... [ 37%] bmtk/bmtk.tests.builder
writing output... [ 38%] bmtk/bmtk.tests.builder.auxi
writing output... [ 40%] bmtk/bmtk.tests.builder.bionet
writing output... [ 41%] bmtk/bmtk.tests.simulator
writing output... [ 42%] bmtk/bmtk.tests.simulator.bionet
writing output... [ 43%] bmtk/bmtk.tests.simulator.pointnet
writing output... [ 44%] bmtk/bmtk.tests.simulator.popnet
writing output... [ 46%] bmtk/bmtk.tests.utils
writing output... [ 47%] bmtk/bmtk.tests.utils.reports
writing output... [ 48%] bmtk/bmtk.tests.utils.reports.compartment
writing output... [ 49%] bmtk/bmtk.tests.utils.reports.spike_trains
writing output... [ 51%] bmtk/bmtk.tests.utils.sonata
writing output... [ 52%] bmtk/bmtk.utils
writing output... [ 53%] bmtk/bmtk.utils.cell_types_db
writing output... [ 54%] bmtk/bmtk.utils.compile_mechanisms
writing output... [ 56%] bmtk/bmtk.utils.create_environment
writing output... [ 57%] bmtk/bmtk.utils.io
writing output... [ 58%] bmtk/bmtk.utils.reports
writing output... [ 59%] bmtk/bmtk.utils.reports.compartment
writing output... [ 60%] bmtk/bmtk.utils.reports.spike_trains
writing output... [ 62%] bmtk/bmtk.utils.sonata
writing output... [ 63%] bmtk/bmtk.utils.sonata.config
writing output... [ 64%] bmtk/modules
writing output... [ 65%] builder
writing output... [ 67%] contributors
writing output... [ 68%] current_clamps
writing output... [ 69%] ecephys_probe
writing output... [ 70%] examples
writing output... [ 72%] filternet
writing output... [ 73%] how_to_cite
writing output... [ 74%] index
writing output... [ 75%] installation
writing output... [ 77%] network_file_formats
writing output... [ 78%] pointnet
writing output... [ 79%] popnet
writing output... [ 80%] registration
writing output... [ 81%] simulators
writing output... [ 83%] tutorial_NetworkBuilder_Intro
writing output... [ 84%] tutorial_auditory_filternet
writing output... [ 85%] tutorial_bionet_disconnected_sims
writing output... [ 86%] tutorial_cell_placement
writing output... [ 88%] tutorial_dynamic_synapses
writing output... [ 89%] tutorial_filter_models
writing output... [ 90%] tutorial_multi_pop
writing output... [ 91%] tutorial_pointnet_modeling
writing output... [ 93%] tutorial_population_modeling
writing output... [ 94%] tutorial_single_cell_clamped
writing output... [ 95%] tutorial_single_cell_syn
writing output... [ 96%] tutorial_single_pop
writing output... [ 98%] tutorial_spike_trains_refractory
writing output... [ 99%] tutorials
writing output... [100%] workshop
/build/reproducible-path/bmtk-1.1.1+ds/docs/autodocs/source/tutorial_bionet_disconnected_sims.ipynb:923: WARNING: Lexing literal_block '{\n "inputs": {\n "replay_edges_1": {\n "input_type": "replay_spikes",\n "module": "replay",\n ...\n }\n "replay_edges_2": {\n "input_type": "replay_spikes",\n "module": "replay",\n ...\n }\n }\n}' as "json" resulted in an error at token: '.'. Retrying in relaxed mode. [misc.highlighting_failure]
generating indices... genindex py-modindex done
copying linked files...
copying notebooks ... [ 8%] tutorial_NetworkBuilder_Intro.ipynb
copying notebooks ... [ 15%] tutorial_auditory_filternet.ipynb
copying notebooks ... [ 23%] tutorial_bionet_disconnected_sims.ipynb
copying notebooks ... [ 31%] tutorial_cell_placement.ipynb
copying notebooks ... [ 38%] tutorial_dynamic_synapses.ipynb
copying notebooks ... [ 46%] tutorial_filter_models.ipynb
copying notebooks ... [ 54%] tutorial_multi_pop.ipynb
copying notebooks ... [ 62%] tutorial_pointnet_modeling.ipynb
copying notebooks ... [ 69%] tutorial_population_modeling.ipynb
copying notebooks ... [ 77%] tutorial_single_cell_clamped.ipynb
copying notebooks ... [ 85%] tutorial_single_cell_syn.ipynb
copying notebooks ... [ 92%] tutorial_single_pop.ipynb
copying notebooks ... [100%] tutorial_spike_trains_refractory.ipynb
highlighting module code... [ 0%] bmtk.analyzer
highlighting module code... [ 1%] bmtk.analyzer.compartment
highlighting module code... [ 1%] bmtk.analyzer.ecp
highlighting module code... [ 2%] bmtk.analyzer.firing_rates
highlighting module code... [ 2%] bmtk.analyzer.io_tools
highlighting module code... [ 3%] bmtk.analyzer.spike_trains
highlighting module code... [ 3%] bmtk.analyzer.spikes_analyzer
highlighting module code... [ 4%] bmtk.analyzer.spikes_loader
highlighting module code... [ 4%] bmtk.analyzer.utils
highlighting module code... [ 4%] bmtk.builder.auxi.edge_connectors
highlighting module code... [ 5%] bmtk.builder.auxi.node_params
highlighting module code... [ 5%] bmtk.builder.bionet
highlighting module code... [ 6%] bmtk.builder.bionet.swc_reader
highlighting module code... [ 6%] bmtk.builder.builder_utils
highlighting module code... [ 7%] bmtk.builder.connection_map
highlighting module code... [ 7%] bmtk.builder.connector
highlighting module code... [ 8%] bmtk.builder.edge
highlighting module code... [ 8%] bmtk.builder.edges_sorter
highlighting module code... [ 8%] bmtk.builder.edges_sorter.memory_sorter
highlighting module code... [ 9%] bmtk.builder.edges_sorter.merge_sorter
highlighting module code... [ 9%] bmtk.builder.functor_cache
highlighting module code... [ 10%] bmtk.builder.id_generator
highlighting module code... [ 10%] bmtk.builder.index_builders
highlighting module code... [ 11%] bmtk.builder.iterator
highlighting module code... [ 11%] bmtk.builder.network_adaptors.dm_network
highlighting module code... [ 12%] bmtk.builder.network_adaptors.dm_network_orig
highlighting module code... [ 12%] bmtk.builder.network_adaptors.edge_props_table
highlighting module code... [ 12%] bmtk.builder.network_adaptors.edges_collator
highlighting module code... [ 13%] bmtk.builder.network_adaptors.network
highlighting module code... [ 13%] bmtk.builder.network_adaptors.nxnetwork
highlighting module code... [ 14%] bmtk.builder.network_builder
highlighting module code... [ 14%] bmtk.builder.node
highlighting module code... [ 15%] bmtk.builder.node_pool
highlighting module code... [ 15%] bmtk.builder.node_set
highlighting module code... [ 16%] bmtk.simulator.bionet.biocell
highlighting module code... [ 16%] bmtk.simulator.bionet.bionetwork
highlighting module code... [ 17%] bmtk.simulator.bionet.biosimulator
highlighting module code... [ 17%] bmtk.simulator.bionet.cell
highlighting module code... [ 17%] bmtk.simulator.bionet.config
highlighting module code... [ 18%] bmtk.simulator.bionet.default_setters.cell_models
highlighting module code... [ 18%] bmtk.simulator.bionet.default_setters.synapse_models
highlighting module code... [ 19%] bmtk.simulator.bionet.default_setters.synaptic_weights
highlighting module code... [ 19%] bmtk.simulator.bionet.gids
highlighting module code... [ 20%] bmtk.simulator.bionet.iclamp
highlighting module code... [ 20%] bmtk.simulator.bionet.io_tools
highlighting module code... [ 21%] bmtk.simulator.bionet.modules.comsol
highlighting module code... [ 21%] bmtk.simulator.bionet.modules.ecephys_module
highlighting module code... [ 21%] bmtk.simulator.bionet.modules.ecp
highlighting module code... [ 22%] bmtk.simulator.bionet.modules.iclamp
highlighting module code... [ 22%] bmtk.simulator.bionet.modules.record_cellvars
highlighting module code... [ 23%] bmtk.simulator.bionet.modules.record_clamp
highlighting module code... [ 23%] bmtk.simulator.bionet.modules.record_netcons
highlighting module code... [ 24%] bmtk.simulator.bionet.modules.record_spikes
highlighting module code... [ 24%] bmtk.simulator.bionet.modules.save_synapses
highlighting module code... [ 25%] bmtk.simulator.bionet.modules.seclamp
highlighting module code... [ 25%] bmtk.simulator.bionet.modules.sim_module
highlighting module code... [ 25%] bmtk.simulator.bionet.modules.xstim
highlighting module code... [ 26%] bmtk.simulator.bionet.modules.xstim_waveforms
highlighting module code... [ 26%] bmtk.simulator.bionet.morphology
highlighting module code... [ 27%] bmtk.simulator.bionet.nml_reader
highlighting module code... [ 27%] bmtk.simulator.bionet.nrn
highlighting module code... [ 28%] bmtk.simulator.bionet.pointprocesscell
highlighting module code... [ 28%] bmtk.simulator.bionet.pointsomacell
highlighting module code... [ 29%] bmtk.simulator.bionet.seclamp
highlighting module code... [ 29%] bmtk.simulator.bionet.sonata_adaptors
highlighting module code... [ 29%] bmtk.simulator.bionet.utils
highlighting module code... [ 30%] bmtk.simulator.bionet.virtualcell
highlighting module code... [ 30%] bmtk.simulator.core.edge_population
highlighting module code... [ 31%] bmtk.simulator.core.graph
highlighting module code... [ 31%] bmtk.simulator.core.io_tools
highlighting module code... [ 32%] bmtk.simulator.core.modules.ecephys_module
highlighting module code... [ 32%] bmtk.simulator.core.modules.iclamp
highlighting module code... [ 33%] bmtk.simulator.core.modules.simulator_module
highlighting module code... [ 33%] bmtk.simulator.core.network_reader
highlighting module code... [ 33%] bmtk.simulator.core.node_population
highlighting module code... [ 34%] bmtk.simulator.core.node_sets
highlighting module code... [ 34%] bmtk.simulator.core.pyfunction_cache
highlighting module code... [ 35%] bmtk.simulator.core.simulation_config
highlighting module code... [ 35%] bmtk.simulator.core.simulation_config_validator
highlighting module code... [ 36%] bmtk.simulator.core.simulator
highlighting module code... [ 36%] bmtk.simulator.core.simulator_network
highlighting module code... [ 37%] bmtk.simulator.core.sonata_reader.edge_adaptor
highlighting module code... [ 37%] bmtk.simulator.core.sonata_reader.network_reader
highlighting module code... [ 38%] bmtk.simulator.core.sonata_reader.node_adaptor
highlighting module code... [ 38%] bmtk.simulator.filternet.auditory_processing
highlighting module code... [ 38%] bmtk.simulator.filternet.cell
highlighting module code... [ 39%] bmtk.simulator.filternet.config
highlighting module code... [ 39%] bmtk.simulator.filternet.default_setters.cell_loaders
highlighting module code... [ 40%] bmtk.simulator.filternet.filternetwork
highlighting module code... [ 40%] bmtk.simulator.filternet.filtersimulator
highlighting module code... [ 41%] bmtk.simulator.filternet.io_tools
highlighting module code... [ 41%] bmtk.simulator.filternet.lgnmodel.cellmetrics
highlighting module code... [ 42%] bmtk.simulator.filternet.lgnmodel.cellmodel
highlighting module code... [ 42%] bmtk.simulator.filternet.lgnmodel.cursor
highlighting module code... [ 42%] bmtk.simulator.filternet.lgnmodel.fitfuns
highlighting module code... [ 43%] bmtk.simulator.filternet.lgnmodel.gaborfilter
highlighting module code... [ 43%] bmtk.simulator.filternet.lgnmodel.kernel
highlighting module code... [ 44%] bmtk.simulator.filternet.lgnmodel.lattice_unit_constructor
highlighting module code... [ 44%] bmtk.simulator.filternet.lgnmodel.lgnmodel1
highlighting module code... [ 45%] bmtk.simulator.filternet.lgnmodel.linearfilter
highlighting module code... [ 45%] bmtk.simulator.filternet.lgnmodel.lnunit
highlighting module code... [ 46%] bmtk.simulator.filternet.lgnmodel.make_cell_list
highlighting module code... [ 46%] bmtk.simulator.filternet.lgnmodel.movie
highlighting module code... [ 46%] bmtk.simulator.filternet.lgnmodel.poissongeneration
highlighting module code... [ 47%] bmtk.simulator.filternet.lgnmodel.spatialfilter
highlighting module code... [ 47%] bmtk.simulator.filternet.lgnmodel.temporalfilter
highlighting module code... [ 48%] bmtk.simulator.filternet.lgnmodel.transferfunction
highlighting module code... [ 48%] bmtk.simulator.filternet.lgnmodel.util_fns
highlighting module code... [ 49%] bmtk.simulator.filternet.lgnmodel.utilities
highlighting module code... [ 49%] bmtk.simulator.filternet.lgnmodel.waveletfilter
highlighting module code... [ 50%] bmtk.simulator.filternet.modules.base
highlighting module code... [ 50%] bmtk.simulator.filternet.modules.create_spikes
highlighting module code... [ 50%] bmtk.simulator.filternet.modules.record_rates
highlighting module code... [ 51%] bmtk.simulator.filternet.pyfunction_cache
highlighting module code... [ 51%] bmtk.simulator.filternet.sonata_adaptors
highlighting module code... [ 52%] bmtk.simulator.pointnet.config
highlighting module code... [ 52%] bmtk.simulator.pointnet.default_setters.cell_models
highlighting module code... [ 53%] bmtk.simulator.pointnet.default_setters.synapse_models
highlighting module code... [ 53%] bmtk.simulator.pointnet.default_setters.synaptic_weights
highlighting module code... [ 54%] bmtk.simulator.pointnet.gids
highlighting module code... [ 54%] bmtk.simulator.pointnet.glif_utils
highlighting module code... [ 54%] bmtk.simulator.pointnet.io_tools
highlighting module code... [ 55%] bmtk.simulator.pointnet.modules.ecephys_module
highlighting module code... [ 55%] bmtk.simulator.pointnet.modules.iclamp
highlighting module code... [ 56%] bmtk.simulator.pointnet.modules.multimeter_reporter
highlighting module code... [ 56%] bmtk.simulator.pointnet.modules.record_spikes
highlighting module code... [ 57%] bmtk.simulator.pointnet.modules.sim_module
highlighting module code... [ 57%] bmtk.simulator.pointnet.modules.spikes_inputs
highlighting module code... [ 58%] bmtk.simulator.pointnet.modules.weight_recorder
highlighting module code... [ 58%] bmtk.simulator.pointnet.nest_utils
highlighting module code... [ 58%] bmtk.simulator.pointnet.pointnetwork
highlighting module code... [ 59%] bmtk.simulator.pointnet.pointsimulator
highlighting module code... [ 59%] bmtk.simulator.pointnet.property_map
highlighting module code... [ 60%] bmtk.simulator.pointnet.sonata_adaptors
highlighting module code... [ 60%] bmtk.simulator.pointnet.utils
highlighting module code... [ 61%] bmtk.simulator.popnet.sonata_adaptors
highlighting module code... [ 61%] bmtk.simulator.popnet.utils
highlighting module code... [ 62%] bmtk.simulator.utils.simulation_inputs
highlighting module code... [ 62%] bmtk.simulator.utils.simulation_reports
highlighting module code... [ 62%] bmtk.tests.builder.auxi.test_edge_connectors
highlighting module code... [ 63%] bmtk.tests.builder.auxi.test_node_params
highlighting module code... [ 63%] bmtk.tests.builder.bionet.test_swc_reader
highlighting module code... [ 64%] bmtk.tests.builder.test_connection_map
highlighting module code... [ 64%] bmtk.tests.builder.test_connector
highlighting module code... [ 65%] bmtk.tests.builder.test_densenetwork
highlighting module code... [ 65%] bmtk.tests.builder.test_edge_iterator
highlighting module code... [ 66%] bmtk.tests.builder.test_edges_sorter
highlighting module code... [ 66%] bmtk.tests.builder.test_id_generator
highlighting module code... [ 67%] bmtk.tests.builder.test_index_builders
highlighting module code... [ 67%] bmtk.tests.builder.test_iterator
highlighting module code... [ 67%] bmtk.tests.builder.test_network
highlighting module code... [ 68%] bmtk.tests.builder.test_network_mpi
highlighting module code... [ 68%] bmtk.tests.builder.test_node_pool
highlighting module code... [ 69%] bmtk.tests.builder.test_node_set
highlighting module code... [ 69%] bmtk.tests.builder.test_save_network
highlighting module code... [ 70%] bmtk.tests.simulator.bionet.bionet_virtual_files
highlighting module code... [ 70%] bmtk.tests.simulator.bionet.set_cell_params
highlighting module code... [ 71%] bmtk.tests.simulator.bionet.set_syn_params
highlighting module code... [ 71%] bmtk.tests.simulator.bionet.set_weights
highlighting module code... [ 71%] bmtk.tests.simulator.bionet.test_biograph
highlighting module code... [ 72%] bmtk.tests.simulator.bionet.test_gids
highlighting module code... [ 72%] bmtk.tests.simulator.bionet.test_iclamp
highlighting module code... [ 73%] bmtk.tests.simulator.bionet.test_morphology
highlighting module code... [ 73%] bmtk.tests.simulator.bionet.test_nrn
highlighting module code... [ 74%] bmtk.tests.simulator.bionet.test_virtualcell
highlighting module code... [ 74%] bmtk.tests.simulator.pointnet.conftest
highlighting module code... [ 75%] bmtk.tests.simulator.pointnet.pointnet_virtual_files
highlighting module code... [ 75%] bmtk.tests.simulator.pointnet.test_glif_utils
highlighting module code... [ 75%] bmtk.tests.simulator.pointnet.test_multimeter_report
highlighting module code... [ 76%] bmtk.tests.simulator.pointnet.test_pointgraph
highlighting module code... [ 76%] bmtk.tests.simulator.pointnet.test_pointnetwork
highlighting module code... [ 77%] bmtk.tests.simulator.popnet.popnet_virtual_files
highlighting module code... [ 77%] bmtk.tests.simulator.popnet.test_popgraph
highlighting module code... [ 78%] bmtk.tests.utils.reports.compartment.test_compartment_reader
highlighting module code... [ 78%] bmtk.tests.utils.reports.compartment.test_compartment_writer
highlighting module code... [ 79%] bmtk.tests.utils.reports.compartment.test_plotting
highlighting module code... [ 79%] bmtk.tests.utils.reports.spike_trains.test_csv_adaptor
highlighting module code... [ 79%] bmtk.tests.utils.reports.spike_trains.test_csv_adaptor_mpi
highlighting module code... [ 80%] bmtk.tests.utils.reports.spike_trains.test_plotting
highlighting module code... [ 80%] bmtk.tests.utils.reports.spike_trains.test_sonata_adaptor
highlighting module code... [ 81%] bmtk.tests.utils.reports.spike_trains.test_sonata_adaptor_mpi
highlighting module code... [ 81%] bmtk.tests.utils.reports.spike_trains.test_spikes_buffer
highlighting module code... [ 82%] bmtk.tests.utils.reports.spike_trains.test_spikes_buffer_mpi
highlighting module code... [ 82%] bmtk.tests.utils.reports.spike_trains.test_spikes_core
highlighting module code... [ 83%] bmtk.tests.utils.sonata.test_config
highlighting module code... [ 83%] bmtk.tests.utils.sonata.test_config_validator
highlighting module code... [ 83%] bmtk.tests.utils.sonata.test_edge_stats
highlighting module code... [ 84%] bmtk.utils.cell_types_db
highlighting module code... [ 84%] bmtk.utils.compile_mechanisms.compile_mechanisms
highlighting module code... [ 85%] bmtk.utils.create_environment.create_environment
highlighting module code... [ 85%] bmtk.utils.create_environment.env_builder
highlighting module code... [ 86%] bmtk.utils.hdf5_helper
highlighting module code... [ 86%] bmtk.utils.io
highlighting module code... [ 87%] bmtk.utils.io.cell_vars
highlighting module code... [ 87%] bmtk.utils.io.firing_rates
highlighting module code... [ 88%] bmtk.utils.io.ioutils
highlighting module code... [ 88%] bmtk.utils.io.spike_trains
highlighting module code... [ 88%] bmtk.utils.lazy_property
highlighting module code... [ 89%] bmtk.utils.reports.compartment.compartment_reader
highlighting module code... [ 89%] bmtk.utils.reports.compartment.compartment_report
highlighting module code... [ 90%] bmtk.utils.reports.compartment.compartment_writer
highlighting module code... [ 90%] bmtk.utils.reports.compartment.core
highlighting module code... [ 91%] bmtk.utils.reports.compartment.plotting
highlighting module code... [ 91%] bmtk.utils.reports.current_writer
highlighting module code... [ 92%] bmtk.utils.reports.spike_trains.core
highlighting module code... [ 92%] bmtk.utils.reports.spike_trains.plotting
highlighting module code... [ 92%] bmtk.utils.reports.spike_trains.spike_train_buffer
highlighting module code... [ 93%] bmtk.utils.reports.spike_trains.spike_train_readers
highlighting module code... [ 93%] bmtk.utils.reports.spike_trains.spike_trains
highlighting module code... [ 94%] bmtk.utils.reports.spike_trains.spike_trains_api
highlighting module code... [ 94%] bmtk.utils.reports.spike_trains.spikes_file_writers
highlighting module code... [ 95%] bmtk.utils.reports.spike_trains.stats
highlighting module code... [ 95%] bmtk.utils.sim_setup
highlighting module code... [ 96%] bmtk.utils.sonata.column_property
highlighting module code... [ 96%] bmtk.utils.sonata.config.sonata_config
highlighting module code... [ 96%] bmtk.utils.sonata.edge
highlighting module code... [ 97%] bmtk.utils.sonata.edge_stats
highlighting module code... [ 97%] bmtk.utils.sonata.file
highlighting module code... [ 98%] bmtk.utils.sonata.file_root
highlighting module code... [ 98%] bmtk.utils.sonata.group
highlighting module code... [ 99%] bmtk.utils.sonata.node
highlighting module code... [ 99%] bmtk.utils.sonata.population
highlighting module code... [100%] bmtk.utils.sonata.types_table
highlighting module code... [100%] bmtk.utils.sonata.utils
writing additional pages... search done
copying images... [ 1%] _static/images/bmtk_architecture_analyzer_highlight.jpg
copying images... [ 2%] _static/images/spikes_report.png
copying images... [ 3%] _static/images/cell_reports.png
copying images... [ 4%] _static/images/segmentation_indexing.jpg
copying images... [ 5%] _static/images/bmtk_architecture_bionet_highlight.jpg
copying images... [ 6%] _static/images/disconnected_normal_sims.png
copying images... [ 7%] _static/images/disconnected_recurrent_only.png
copying images... [ 8%] _static/images/disconnected_scnn1a.png
copying images... [ 9%] _static/images/all_network_cropped.png
copying images... [ 10%] _static/images/ext_inputs_raster.png
copying images... [ 11%] _static/images/v1_raster.png
copying images... [ 12%] _static/images/bmtk_architecture_builder_highlight.jpg
copying images... [ 12%] _static/images/builder_add_nodes.jpg
copying images... [ 13%] _static/images/builder_add_edges.jpg
copying images... [ 14%] _static/images/builder_complete_network.jpg
copying images... [ 15%] _static/images/sonata_structure.jpg
copying images... [ 16%] _static/images/iclamp_stim_single.png
copying images... [ 17%] _static/images/iclamp_stim_multiple.png
copying images... [ 18%] _static/images/ctdb_sweep_selection.png
copying images... [ 19%] _static/images/ecephys_probe_intervals.png
copying images... [ 20%] _static/images/bmtk_architecture_filternet_highlight.jpg
copying images... [ 21%] _static/images/lnp_model.jpg
copying images... [ 22%] _static/images/levels_of_resolution_noml.png
copying images... [ 23%] _static/images/bmtk_workflow.jpg
copying images... [ 24%] _static/images/bmtk_architecture.jpg
copying images... [ 25%] _static/images/graph_structure.png
copying images... [ 26%] _static/images/nodes_h5_structure.png
copying images... [ 27%] _static/images/node_types.png
copying images... [ 28%] _static/images/edges_h5_structure.png
copying images... [ 29%] _static/images/edge_types.png
copying images... [ 30%] _static/images/bmtk_architecture_pointnet_highlight.jpg
copying images... [ 31%] _static/images/bmtk_architecture_popnet_highlight.jpg
copying images... [ 32%] _static/images/bmtk_architecture_simulator_highlight.jpg
copying images... [ 33%] _static/images/brunel_comparisons.jpg
copying images... [ 34%] _static/images/bmtk_sim_env.png
copying images... [ 35%] ../../../build/html/.doctrees/nbsphinx/tutorial_auditory_filternet_2_1.png
copying images... [ 36%] ../../../build/html/.doctrees/nbsphinx/tutorial_auditory_filternet_2_2.png
copying images... [ 37%] _static/_tutorial_images/Filters_sp_t_mod.png
copying images... [ 38%] _static/_tutorial_images/Responses_to_diff_scales_and_orientations.png
copying images... [ 38%] ../../../build/html/.doctrees/nbsphinx/tutorial_auditory_filternet_7_1.png
copying images... [ 39%] ../../../build/html/.doctrees/nbsphinx/tutorial_auditory_filternet_7_2.png
copying images... [ 40%] _static/_tutorial_images/disconnected_sim_figure.png
copying images... [ 41%] ../../../build/html/.doctrees/nbsphinx/tutorial_bionet_disconnected_sims_4_0.png
copying images... [ 42%] ../../../build/html/.doctrees/nbsphinx/tutorial_bionet_disconnected_sims_7_0.png
copying images... [ 43%] ../../../build/html/.doctrees/nbsphinx/tutorial_bionet_disconnected_sims_11_0.png
copying images... [ 44%] ../../../build/html/.doctrees/nbsphinx/tutorial_bionet_disconnected_sims_14_0.png
copying images... [ 45%] ../../../build/html/.doctrees/nbsphinx/tutorial_bionet_disconnected_sims_17_0.png
copying images... [ 46%] ../../../build/html/.doctrees/nbsphinx/tutorial_bionet_disconnected_sims_20_0.png
copying images... [ 47%] ../../../build/html/.doctrees/nbsphinx/tutorial_cell_placement_2_0.png
copying images... [ 48%] ../../../build/html/.doctrees/nbsphinx/tutorial_cell_placement_4_0.png
copying images... [ 49%] ../../../build/html/.doctrees/nbsphinx/tutorial_cell_placement_6_0.png
copying images... [ 50%] ../../../build/html/.doctrees/nbsphinx/tutorial_cell_placement_8_0.png
copying images... [ 51%] ../../../build/html/.doctrees/nbsphinx/tutorial_cell_placement_10_1.png
copying images... [ 52%] ../../../build/html/.doctrees/nbsphinx/tutorial_cell_placement_11_1.png
copying images... [ 53%] ../../../build/html/.doctrees/nbsphinx/tutorial_cell_placement_14_1.png
copying images... [ 54%] ../../../build/html/.doctrees/nbsphinx/tutorial_cell_placement_16_1.png
copying images... [ 55%] ../../../build/html/.doctrees/nbsphinx/tutorial_cell_placement_18_1.png
copying images... [ 56%] ../../../build/html/.doctrees/nbsphinx/tutorial_cell_placement_20_1.png
copying images... [ 57%] ../../../build/html/.doctrees/nbsphinx/tutorial_cell_placement_21_1.png
copying images... [ 58%] ../../../build/html/.doctrees/nbsphinx/tutorial_cell_placement_22_1.png
copying images... [ 59%] ../../../build/html/.doctrees/nbsphinx/tutorial_dynamic_synapses_8_0.png
copying images... [ 60%] ../../../build/html/.doctrees/nbsphinx/tutorial_dynamic_synapses_10_0.png
copying images... [ 61%] ../../../build/html/.doctrees/nbsphinx/tutorial_dynamic_synapses_18_0.png
copying images... [ 62%] ../../../build/html/.doctrees/nbsphinx/tutorial_dynamic_synapses_19_0.png
copying images... [ 62%] ../../../build/html/.doctrees/nbsphinx/tutorial_dynamic_synapses_26_0.png
copying images... [ 63%] ../../../build/html/.doctrees/nbsphinx/tutorial_dynamic_synapses_27_0.png
copying images... [ 64%] _static/_tutorial_images/bmtk_lnp.png
copying images... [ 65%] ../../../build/html/.doctrees/nbsphinx/tutorial_filter_models_9_0.png
copying images... [ 66%] _static/_tutorial_images/filternet_spat_filter.png
copying images... [ 67%] _static/_tutorial_images/filternet_temp_filter.png
copying images... [ 68%] _static/_tutorial_images/filternet_sfilt_params.png
copying images... [ 69%] _static/_tutorial_images/filternet_tfilt_params.png
copying images... [ 70%] ../../../build/html/.doctrees/nbsphinx/tutorial_multi_pop_26_0.png
copying images... [ 71%] ../../../build/html/.doctrees/nbsphinx/tutorial_multi_pop_26_1.png
copying images... [ 72%] ../../../build/html/.doctrees/nbsphinx/tutorial_multi_pop_28_0.png
copying images... [ 73%] ../../../build/html/.doctrees/nbsphinx/tutorial_multi_pop_28_1.png
copying images... [ 74%] ../../../build/html/.doctrees/nbsphinx/tutorial_multi_pop_30_0.png
copying images... [ 75%] ../../../build/html/.doctrees/nbsphinx/tutorial_pointnet_modeling_27_0.png
copying images... [ 76%] ../../../build/html/.doctrees/nbsphinx/tutorial_pointnet_modeling_29_0.png
copying images... [ 77%] ../../../build/html/.doctrees/nbsphinx/tutorial_pointnet_modeling_33_0.png
copying images... [ 78%] _static/_tutorial_images/raster_120cells_orig.png
copying images... [ 79%] _static/_tutorial_images/raster_120cells_perturbed.png
copying images... [ 80%] ../../../build/html/.doctrees/nbsphinx/tutorial_population_modeling_18_0.png
copying images... [ 81%] ../../../build/html/.doctrees/nbsphinx/tutorial_single_cell_clamped_16_0.png
copying images... [ 82%] ../../../build/html/.doctrees/nbsphinx/tutorial_single_cell_clamped_16_1.png
copying images... [ 83%] ../../../build/html/.doctrees/nbsphinx/tutorial_single_cell_syn_22_0.png
copying images... [ 84%] ../../../build/html/.doctrees/nbsphinx/tutorial_single_cell_syn_22_1.png
copying images... [ 85%] ../../../build/html/.doctrees/nbsphinx/tutorial_single_pop_19_0.png
copying images... [ 86%] ../../../build/html/.doctrees/nbsphinx/tutorial_single_pop_21_0.png
copying images... [ 87%] ../../../build/html/.doctrees/nbsphinx/tutorial_single_pop_21_1.png
copying images... [ 88%] ../../../build/html/.doctrees/nbsphinx/tutorial_single_pop_21_2.png
copying images... [ 88%] ../../../build/html/.doctrees/nbsphinx/tutorial_spike_trains_refractory_1_1.png
copying images... [ 89%] ../../../build/html/.doctrees/nbsphinx/tutorial_spike_trains_refractory_3_1.png
copying images... [ 90%] ../../../build/html/.doctrees/nbsphinx/tutorial_spike_trains_refractory_5_1.png
copying images... [ 91%] ../../../build/html/.doctrees/nbsphinx/tutorial_spike_trains_refractory_7_1.png
copying images... [ 92%] ../../../build/html/.doctrees/nbsphinx/tutorial_spike_trains_refractory_7_2.png
copying images... [ 93%] ../../../build/html/.doctrees/nbsphinx/tutorial_spike_trains_refractory_9_1.png
copying images... [ 94%] ../../../build/html/.doctrees/nbsphinx/tutorial_spike_trains_refractory_9_2.png
copying images... [ 95%] ../../../build/html/.doctrees/nbsphinx/tutorial_spike_trains_refractory_11_1.png
copying images... [ 96%] ../../../build/html/.doctrees/nbsphinx/tutorial_spike_trains_refractory_13_1.png
copying images... [ 97%] ../../../build/html/.doctrees/nbsphinx/tutorial_spike_trains_refractory_15_1.png
copying images... [ 98%] ../../../build/html/.doctrees/nbsphinx/tutorial_spike_trains_refractory_17_0.png
copying images... [ 99%] ../../../build/html/.doctrees/nbsphinx/tutorial_spike_trains_refractory_17_1.png
copying images... [100%] _static/images/modelingworkshopbanner.jpg
dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded, 28 warnings.
The HTML pages are in build/html.
make[1]: Leaving directory '/build/reproducible-path/bmtk-1.1.1+ds'
dh_auto_test -O--buildsystem=pybuild
I: pybuild pybuild:308: cp -r /build/reproducible-path/bmtk-1.1.1+ds/bmtk/tests /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/
I: pybuild base:311: cd /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build; python3.12 -m pytest
============================= test session starts ==============================
platform linux -- Python 3.12.8, pytest-8.3.4, pluggy-1.5.0
rootdir: /build/reproducible-path/bmtk-1.1.1+ds
plugins: typeguard-4.4.1
collected 361 items / 5 skipped
bmtk/tests/builder/auxi/test_edge_connectors.py .. [ 0%]
bmtk/tests/builder/auxi/test_node_params.py ......s [ 2%]
bmtk/tests/builder/test_connection_map.py ....... [ 4%]
bmtk/tests/builder/test_connector.py ..... [ 5%]
bmtk/tests/builder/test_densenetwork.py ... [ 6%]
bmtk/tests/builder/test_edge_iterator.py ... [ 7%]
bmtk/tests/builder/test_edges_sorter.py ... [ 8%]
bmtk/tests/builder/test_id_generator.py ...... [ 9%]
bmtk/tests/builder/test_index_builders.py .. [ 10%]
bmtk/tests/builder/test_iterator.py ........ [ 12%]
bmtk/tests/builder/test_network.py ............ [ 16%]
bmtk/tests/builder/test_network_mpi.py ssssssss [ 18%]
bmtk/tests/builder/test_node_pool.py ..... [ 19%]
bmtk/tests/builder/test_node_set.py ... [ 20%]
bmtk/tests/builder/test_save_network.py ...... [ 22%]
bmtk/tests/simulator/bionet/test_biograph.py ss [ 22%]
bmtk/tests/simulator/bionet/test_gids.py s [ 22%]
bmtk/tests/simulator/bionet/test_nrn.py sssssss [ 24%]
bmtk/tests/simulator/core/test_ecephys_module.py sssssss [ 26%]
bmtk/tests/simulator/core/test_iclamp.py ..... [ 28%]
bmtk/tests/simulator/core/test_io_tools.py .. [ 28%]
bmtk/tests/simulator/core/test_pyfunction_cache.py ...... [ 30%]
bmtk/tests/simulator/core/test_simulation_config.py .. [ 31%]
bmtk/tests/simulator/core/test_simulation_config_validator.py ... [ 31%]
bmtk/tests/simulator/filternet/lgnmodel/test_kernels.py ... [ 32%]
bmtk/tests/simulator/filternet/lgnmodel/test_movie.py ..... [ 34%]
bmtk/tests/simulator/filternet/lgnmodel/test_subclass_metrics.py ...... [ 35%]
bmtk/tests/simulator/filternet/lgnmodel/test_transferfunction.py . [ 36%]
bmtk/tests/simulator/filternet/lgnmodel/test_units.py .... [ 37%]
bmtk/tests/simulator/filternet/lgnmodel/test_utils.py . [ 37%]
bmtk/tests/simulator/filternet/test_default_setters.py ................. [ 42%]
. [ 42%]
bmtk/tests/simulator/filternet/test_filternet_movies.py . [ 42%]
bmtk/tests/simulator/pointnet/test_multimeter_report.py ssss [ 43%]
bmtk/tests/simulator/pointnet/test_pointgraph.py ss [ 44%]
bmtk/tests/simulator/pointnet/test_pointnetwork.py sssssssssssssssss [ 49%]
bmtk/tests/simulator/popnet/test_popgraph.py s [ 49%]
bmtk/tests/simulator/utils/test_simulation_inputs.py ..... [ 50%]
bmtk/tests/simulator/utils/test_simulation_reports.py .... [ 51%]
bmtk/tests/utils/reports/compartment/test_compartment_reader.py .. [ 52%]
bmtk/tests/utils/reports/compartment/test_compartment_writer.py ...... [ 54%]
bmtk/tests/utils/reports/compartment/test_plotting.py ......... [ 56%]
bmtk/tests/utils/reports/spike_trains/test_csv_adaptor.py .............. [ 60%]
[ 60%]
bmtk/tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py .......... [ 63%]
...... [ 64%]
bmtk/tests/utils/reports/spike_trains/test_plotting.py ................. [ 69%]
... [ 70%]
bmtk/tests/utils/reports/spike_trains/test_sonata_adaptor.py ........... [ 73%]
................ [ 77%]
bmtk/tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py ....... [ 79%]
............. [ 83%]
bmtk/tests/utils/reports/spike_trains/test_spikes_buffer.py ............ [ 86%]
...... [ 88%]
bmtk/tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py ........ [ 90%]
........ [ 92%]
bmtk/tests/utils/reports/spike_trains/test_spikes_core.py ..... [ 94%]
bmtk/tests/utils/sonata/test_config.py ........... [ 97%]
bmtk/tests/utils/sonata/test_config_validator.py .... [ 98%]
bmtk/tests/utils/sonata/test_edge_stats.py ...... [100%]
=============================== warnings summary ===============================
.pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
/build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/index_builders.py:205: FutureWarning: Series.fillna with 'method' is deprecated and will raise in a future version. Use obj.ffill() or obj.bfill() instead.
i2r_table_df['range_end'] = i2r_table_df['range_end'].fillna(method='ffill')
.pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
/build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/index_builders.py:206: FutureWarning: A value is trying to be set on a copy of a DataFrame or Series through chained assignment using an inplace method.
The behavior will change in pandas 3.0. This inplace method will never work because the intermediate object on which we are setting values always behaves as a copy.
For example, when doing 'df[col].method(value, inplace=True)', try using 'df.method({col: value}, inplace=True)' or df[col] = df[col].method(value) instead, to perform the operation inplace on the original object.
i2r_table_df['range_end'].fillna(0, inplace=True)
.pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.12/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
/build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/builder/index_builders.py:209: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0!
You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy.
df["col"][row_indexer] = value
Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`.
See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy
i2r_table_df['range_beg'][nans_mask] = i2r_table_df['range_end'][nans_mask]
.pybuild/cpython3_3.12/build/bmtk/tests/simulator/core/test_simulation_config_validator.py::test_validate_network
/build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/core/simulation_config_validator.py:30: DeprecationWarning: Subclassing validator classes is not intended to be part of their public API. A future version will make doing so an error, as the behavior of subclasses isn't guaranteed to stay the same between releases of jsonschema. Instead, prefer composition of validators, wrapping them in an object owned entirely by the downstream library.
.pybuild/cpython3_3.12/build/bmtk/tests/simulator/filternet/lgnmodel/test_subclass_metrics.py::test_get_data_metrics[sus_sus-expected_val4]
.pybuild/cpython3_3.12/build/bmtk/tests/simulator/filternet/lgnmodel/test_subclass_metrics.py::test_get_data_metrics[trans_sus-expected_val5]
/build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/simulator/filternet/lgnmodel/cellmetrics.py:57: FutureWarning: The behavior of DataFrame.idxmax with all-NA values, or any-NA and skipna=False, is deprecated. In a future version this will raise ValueError
exp_df['max_tf'] = sub_df.idxmax(axis=1).values # sub_df.idxmax(axis=1)
.pybuild/cpython3_3.12/build/bmtk/tests/utils/sonata/test_edge_stats.py::test_edge_props_distribution
.pybuild/cpython3_3.12/build/bmtk/tests/utils/sonata/test_edge_stats.py::test_edge_props_distribution
.pybuild/cpython3_3.12/build/bmtk/tests/utils/sonata/test_edge_stats.py::test_edge_props_distribution
.pybuild/cpython3_3.12/build/bmtk/tests/utils/sonata/test_edge_stats.py::test_edge_props_distribution
.pybuild/cpython3_3.12/build/bmtk/tests/utils/sonata/test_edge_stats.py::test_nsyns_distribution
.pybuild/cpython3_3.12/build/bmtk/tests/utils/sonata/test_edge_stats.py::test_nsyns_distribution
.pybuild/cpython3_3.12/build/bmtk/tests/utils/sonata/test_edge_stats.py::test_nsyns_distribution
/build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata/edge_stats.py:282: FutureWarning: Downcasting object dtype arrays on .fillna, .ffill, .bfill is deprecated and will change in a future version. Call result.infer_objects(copy=False) instead. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)`
edges_df[edge_prop] = fill_val if edge_prop not in edges_df.columns else edges_df[edge_prop].fillna(fill_val)
.pybuild/cpython3_3.12/build/bmtk/tests/utils/sonata/test_edge_stats.py::test_edge_stats_table
/build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.12/build/bmtk/utils/sonata/edge_stats.py:434: FutureWarning: Downcasting object dtype arrays on .fillna, .ffill, .bfill is deprecated and will change in a future version. Call result.infer_objects(copy=False) instead. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)`
edges_df['nsyns'] = 1 if 'nsyns' not in edges_df.columns else edges_df['nsyns'].fillna(1)
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================ 311 passed, 55 skipped, 29 warnings in 17.97s =================
I: pybuild pybuild:308: cp -r /build/reproducible-path/bmtk-1.1.1+ds/bmtk/tests /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/
I: pybuild base:311: cd /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build; python3.13 -m pytest
============================= test session starts ==============================
platform linux -- Python 3.13.1, pytest-8.3.4, pluggy-1.5.0
rootdir: /build/reproducible-path/bmtk-1.1.1+ds
plugins: typeguard-4.4.1
NEURON mechanisms not found in /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/tests/simulator/bionet/components/mechanisms.
collected 399 items / 1 skipped
bmtk/tests/builder/auxi/test_edge_connectors.py .. [ 0%]
bmtk/tests/builder/auxi/test_node_params.py ......s [ 2%]
bmtk/tests/builder/bionet/test_swc_reader.py s [ 2%]
bmtk/tests/builder/test_connection_map.py ....... [ 4%]
bmtk/tests/builder/test_connector.py ..... [ 5%]
bmtk/tests/builder/test_densenetwork.py ... [ 6%]
bmtk/tests/builder/test_edge_iterator.py ... [ 7%]
bmtk/tests/builder/test_edges_sorter.py ... [ 7%]
bmtk/tests/builder/test_id_generator.py ...... [ 9%]
bmtk/tests/builder/test_index_builders.py .. [ 9%]
bmtk/tests/builder/test_iterator.py ........ [ 11%]
bmtk/tests/builder/test_network.py ............ [ 14%]
bmtk/tests/builder/test_network_mpi.py ssssssss [ 16%]
bmtk/tests/builder/test_node_pool.py ..... [ 18%]
bmtk/tests/builder/test_node_set.py ... [ 18%]
bmtk/tests/builder/test_save_network.py ...... [ 20%]
bmtk/tests/simulator/bionet/test_biograph.py ss [ 20%]
bmtk/tests/simulator/bionet/test_gids.py . [ 21%]
bmtk/tests/simulator/bionet/test_iclamp.py .................. [ 25%]
bmtk/tests/simulator/bionet/test_morphology.py F.FFFs..FF [ 28%]
bmtk/tests/simulator/bionet/test_nrn.py ....sss [ 29%]
bmtk/tests/simulator/bionet/test_virtualcell.py sssssssss [ 32%]
bmtk/tests/simulator/core/test_ecephys_module.py sssssss [ 33%]
bmtk/tests/simulator/core/test_iclamp.py ..... [ 35%]
bmtk/tests/simulator/core/test_io_tools.py .. [ 35%]
bmtk/tests/simulator/core/test_pyfunction_cache.py ...... [ 37%]
bmtk/tests/simulator/core/test_simulation_config.py .. [ 37%]
bmtk/tests/simulator/core/test_simulation_config_validator.py ... [ 38%]
bmtk/tests/simulator/filternet/lgnmodel/test_kernels.py ... [ 39%]
bmtk/tests/simulator/filternet/lgnmodel/test_movie.py ..... [ 40%]
bmtk/tests/simulator/filternet/lgnmodel/test_subclass_metrics.py ...... [ 41%]
bmtk/tests/simulator/filternet/lgnmodel/test_transferfunction.py . [ 42%]
bmtk/tests/simulator/filternet/lgnmodel/test_units.py .... [ 43%]
bmtk/tests/simulator/filternet/lgnmodel/test_utils.py . [ 43%]
bmtk/tests/simulator/filternet/test_default_setters.py ................. [ 47%]
. [ 47%]
bmtk/tests/simulator/filternet/test_filternet_movies.py . [ 48%]
bmtk/tests/simulator/pointnet/test_multimeter_report.py ssss [ 49%]
bmtk/tests/simulator/pointnet/test_pointgraph.py ss [ 49%]
bmtk/tests/simulator/pointnet/test_pointnetwork.py sssssssssssssssss [ 53%]
bmtk/tests/simulator/popnet/test_popgraph.py s [ 54%]
bmtk/tests/simulator/utils/test_simulation_inputs.py ..... [ 55%]
bmtk/tests/simulator/utils/test_simulation_reports.py .... [ 56%]
bmtk/tests/utils/reports/compartment/test_compartment_reader.py .. [ 56%]
bmtk/tests/utils/reports/compartment/test_compartment_writer.py ...... [ 58%]
bmtk/tests/utils/reports/compartment/test_plotting.py ......... [ 60%]
bmtk/tests/utils/reports/spike_trains/test_csv_adaptor.py .............. [ 64%]
[ 64%]
bmtk/tests/utils/reports/spike_trains/test_csv_adaptor_mpi.py .......... [ 66%]
...... [ 68%]
bmtk/tests/utils/reports/spike_trains/test_plotting.py ................. [ 72%]
... [ 73%]
bmtk/tests/utils/reports/spike_trains/test_sonata_adaptor.py ........... [ 75%]
................ [ 79%]
bmtk/tests/utils/reports/spike_trains/test_sonata_adaptor_mpi.py ....... [ 81%]
............. [ 84%]
bmtk/tests/utils/reports/spike_trains/test_spikes_buffer.py ............ [ 87%]
...... [ 89%]
bmtk/tests/utils/reports/spike_trains/test_spikes_buffer_mpi.py ........ [ 91%]
........ [ 93%]
bmtk/tests/utils/reports/spike_trains/test_spikes_core.py ..... [ 94%]
bmtk/tests/utils/sonata/test_config.py ........... [ 97%]
bmtk/tests/utils/sonata/test_config_validator.py .... [ 98%]
bmtk/tests/utils/sonata/test_edge_stats.py ...... [100%]
=================================== FAILURES ===================================
__________________________________ test_base ___________________________________
@pytest.mark.skipif(not has_mechanism, reason='Mechanisms has not been compiled, run nrnivmodl mechanisms.')
@pytest.mark.skipif(not nrn_installed, reason='NEURON is not installed')
hobj = load_hobj()
morph = Morphology(hobj)
assert(morph.nseg == 87)
assert(len(morph.seg_props.type) == 87)
assert(len(morph.seg_props.area) == 87)
assert(len(morph.seg_props.x) == 87)
assert(len(morph.seg_props.dist) == 87)
assert(len(morph.seg_props.length) == 87)
assert(morph.seg_props.type[0] == 1 and morph.seg_props.type[1] == 2)
assert(np.isclose(morph.seg_props.area[0], 425.756, atol=1.0e-2))
assert(morph.seg_props.x[0] == 0.5)
assert(np.isclose(morph.seg_props.dist[0], 5.82, atol=1.0e-2))
assert(np.isclose(morph.seg_props.length[0], 11.64, atol=1.0e-2))
assert(isinstance(morph.seg_coords.p0, np.ndarray) and morph.seg_coords.p0.shape == (3, 87))
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _bmtk/simulator/bionet/morphology.py:311: in seg_coords
return self._seg_coords.get()
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <bmtk.simulator.bionet.morphology._LazySegmentCoords object at 0x7fe2cea82900>
# Iterates through each segment (one section may contain one or more segments). We use NEURON's
# segment.x to get the mid-point and lenght of each segment we we can use to find and store the beginning
# (p0) and end (p1) of each segment. We also shift so the middle of the soma is at the origin.
nseg = np.sum([s.nseg for s in self._hobj.all])
E TypeError: Not an iterable HocObjectbmtk/simulator/bionet/morphology.py:117: TypeError
__________________________________ test_full ___________________________________
@pytest.mark.skipif(not has_mechanism, reason='Mechanisms has not been compiled, run nrnivmodl mechanisms.')
@pytest.mark.skipif(not nrn_installed, reason='NEURON is not installed')
hobj = load_hobj()
fix_axon_peri(hobj)
morph = Morphology(hobj)
morph.set_segment_dl(20.0)
morph = morph.move_and_rotate(
soma_coords=[100.0, -100.0, 0.0],rotation_angles=[90.0, 180.0, 0.0]
)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
bmtk/simulator/bionet/morphology.py:422: in move_and_rotate
old_seg_coords = self.seg_coords
bmtk/simulator/bionet/morphology.py:311: in seg_coords
return self._seg_coords.get()
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <bmtk.simulator.bionet.morphology._LazySegmentCoords object at 0x7fe2ce865250>
# Iterates through each segment (one section may contain one or more segments). We use NEURON's
# segment.x to get the mid-point and lenght of each segment we we can use to find and store the beginning
# (p0) and end (p1) of each segment. We also shift so the middle of the soma is at the origin.
nseg = np.sum([s.nseg for s in self._hobj.all])
E TypeError: Not an iterable HocObjectbmtk/simulator/bionet/morphology.py:117: TypeError
________________________________ test_multicell ________________________________
@pytest.mark.skipif(not has_mechanism, reason='Mechanisms has not been compiled, run nrnivmodl mechanisms.')
@pytest.mark.skipif(not nrn_installed, reason='NEURON is not installed')
hobj = load_hobj()
fix_axon_peri(hobj)
morph = Morphology(hobj)
morph.set_segment_dl(20.0)
morph1 = morph.move_and_rotate(
soma_coords=[0.0, 100.0, 0.0],rotation_angles=[0.0, 0.0, 0.0]
)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
bmtk/simulator/bionet/morphology.py:422: in move_and_rotate
old_seg_coords = self.seg_coords
bmtk/simulator/bionet/morphology.py:311: in seg_coords
return self._seg_coords.get()
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <bmtk.simulator.bionet.morphology._LazySegmentCoords object at 0x7fe2ce885040>
# Iterates through each segment (one section may contain one or more segments). We use NEURON's
# segment.x to get the mid-point and lenght of each segment we we can use to find and store the beginning
# (p0) and end (p1) of each segment. We also shift so the middle of the soma is at the origin.
nseg = np.sum([s.nseg for s in self._hobj.all])
E TypeError: Not an iterable HocObjectbmtk/simulator/bionet/morphology.py:117: TypeError
______________________________ test_find_sections ______________________________
@pytest.mark.skipif(not has_mechanism, reason='Mechanisms has not been compiled, run nrnivmodl mechanisms.')
@pytest.mark.skipif(not nrn_installed, reason='NEURON is not installed')
hobj = load_hobj()
fix_axon_peri(hobj)
morph = Morphology(hobj)
morph.set_segment_dl(20.0)
morph = morph.move_and_rotate(
soma_coords=[100.0, -100.0, 0.0],rotation_angles=[90.0, 180.0, 0.0]
)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
bmtk/simulator/bionet/morphology.py:422: in move_and_rotate
old_seg_coords = self.seg_coords
bmtk/simulator/bionet/morphology.py:311: in seg_coords
return self._seg_coords.get()
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <bmtk.simulator.bionet.morphology._LazySegmentCoords object at 0x7fe2ce8859d0>
# Iterates through each segment (one section may contain one or more segments). We use NEURON's
# segment.x to get the mid-point and lenght of each segment we we can use to find and store the beginning
# (p0) and end (p1) of each segment. We also shift so the middle of the soma is at the origin.
nseg = np.sum([s.nseg for s in self._hobj.all])
E TypeError: Not an iterable HocObjectbmtk/simulator/bionet/morphology.py:117: TypeError
_____________________________ test_move_and_rotate _____________________________
@pytest.mark.skipif(not has_mechanism, reason='Mechanisms has not been compiled, run nrnivmodl mechanisms.')
@pytest.mark.skipif(not nrn_installed, reason='NEURON is not installed')
hobj = load_hobj()
# fix_axon_peri(hobj)
morph1 = Morphology(hobj)
morph2 = morph1.move_and_rotate(
soma_coords=[100.0, -100.0, 0.0],rotation_angles=[90.0, 180.0, 0.0],
inplace=False
)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
bmtk/simulator/bionet/morphology.py:422: in move_and_rotate
old_seg_coords = self.seg_coords
bmtk/simulator/bionet/morphology.py:311: in seg_coords
return self._seg_coords.get()
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <bmtk.simulator.bionet.morphology._LazySegmentCoords object at 0x7fe2ce754bb0>
# Iterates through each segment (one section may contain one or more segments). We use NEURON's
# segment.x to get the mid-point and lenght of each segment we we can use to find and store the beginning
# (p0) and end (p1) of each segment. We also shift so the middle of the soma is at the origin.
nseg = np.sum([s.nseg for s in self._hobj.all])
E TypeError: Not an iterable HocObjectbmtk/simulator/bionet/morphology.py:117: TypeError
_________________________ test_move_and_rotate_cached __________________________
@pytest.mark.skipif(not has_mechanism, reason='Mechanisms has not been compiled, run nrnivmodl mechanisms.')
@pytest.mark.skipif(not nrn_installed, reason='NEURON is not installed')
hobj = load_hobj()
morph1 = Morphology.load(hobj, morphology_file=RORB_SWC_PATH, cache_seg_props=True)
morph2 = Morphology.load(hobj, morphology_file=RORB_SWC_PATH, cache_seg_props=True)
# initially morph1 and morph2 share the same SegmentCoords object, make sure after a move_and_rotate is done
# the two morphology has different coordinates
assert(morph1.seg_coords == morph2.seg_coords)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _bmtk/simulator/bionet/morphology.py:311: in seg_coords
return self._seg_coords.get()
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <bmtk.simulator.bionet.morphology._LazySegmentCoords object at 0x7fe2ce80cb90>
# Iterates through each segment (one section may contain one or more segments). We use NEURON's
# segment.x to get the mid-point and lenght of each segment we we can use to find and store the beginning
# (p0) and end (p1) of each segment. We also shift so the middle of the soma is at the origin.
nseg = np.sum([s.nseg for s in self._hobj.all])
E TypeError: Not an iterable HocObjectbmtk/simulator/bionet/morphology.py:117: TypeError
=============================== warnings summary ===============================
.pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
/build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/index_builders.py:205: FutureWarning: Series.fillna with 'method' is deprecated and will raise in a future version. Use obj.ffill() or obj.bfill() instead.
i2r_table_df['range_end'] = i2r_table_df['range_end'].fillna(method='ffill')
.pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
/build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/index_builders.py:206: FutureWarning: A value is trying to be set on a copy of a DataFrame or Series through chained assignment using an inplace method.
The behavior will change in pandas 3.0. This inplace method will never work because the intermediate object on which we are setting values always behaves as a copy.
For example, when doing 'df[col].method(value, inplace=True)', try using 'df.method({col: value}, inplace=True)' or df[col] = df[col].method(value) instead, to perform the operation inplace on the original object.
i2r_table_df['range_end'].fillna(0, inplace=True)
.pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
.pybuild/cpython3_3.13/build/bmtk/tests/builder/test_index_builders.py::test_create_index[create_index_on_disk-indexer_args1]
/build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/builder/index_builders.py:209: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0!
You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy.
df["col"][row_indexer] = value
Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`.
See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy
i2r_table_df['range_beg'][nans_mask] = i2r_table_df['range_end'][nans_mask]
.pybuild/cpython3_3.13/build/bmtk/tests/simulator/core/test_simulation_config_validator.py::test_validate_network
/build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/core/simulation_config_validator.py:30: DeprecationWarning: Subclassing validator classes is not intended to be part of their public API. A future version will make doing so an error, as the behavior of subclasses isn't guaranteed to stay the same between releases of jsonschema. Instead, prefer composition of validators, wrapping them in an object owned entirely by the downstream library.
.pybuild/cpython3_3.13/build/bmtk/tests/simulator/filternet/lgnmodel/test_subclass_metrics.py::test_get_data_metrics[sus_sus-expected_val4]
.pybuild/cpython3_3.13/build/bmtk/tests/simulator/filternet/lgnmodel/test_subclass_metrics.py::test_get_data_metrics[trans_sus-expected_val5]
/build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/simulator/filternet/lgnmodel/cellmetrics.py:57: FutureWarning: The behavior of DataFrame.idxmax with all-NA values, or any-NA and skipna=False, is deprecated. In a future version this will raise ValueError
exp_df['max_tf'] = sub_df.idxmax(axis=1).values # sub_df.idxmax(axis=1)
.pybuild/cpython3_3.13/build/bmtk/tests/utils/sonata/test_edge_stats.py::test_edge_props_distribution
.pybuild/cpython3_3.13/build/bmtk/tests/utils/sonata/test_edge_stats.py::test_edge_props_distribution
.pybuild/cpython3_3.13/build/bmtk/tests/utils/sonata/test_edge_stats.py::test_edge_props_distribution
.pybuild/cpython3_3.13/build/bmtk/tests/utils/sonata/test_edge_stats.py::test_edge_props_distribution
.pybuild/cpython3_3.13/build/bmtk/tests/utils/sonata/test_edge_stats.py::test_nsyns_distribution
.pybuild/cpython3_3.13/build/bmtk/tests/utils/sonata/test_edge_stats.py::test_nsyns_distribution
.pybuild/cpython3_3.13/build/bmtk/tests/utils/sonata/test_edge_stats.py::test_nsyns_distribution
/build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata/edge_stats.py:282: FutureWarning: Downcasting object dtype arrays on .fillna, .ffill, .bfill is deprecated and will change in a future version. Call result.infer_objects(copy=False) instead. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)`
edges_df[edge_prop] = fill_val if edge_prop not in edges_df.columns else edges_df[edge_prop].fillna(fill_val)
.pybuild/cpython3_3.13/build/bmtk/tests/utils/sonata/test_edge_stats.py::test_edge_stats_table
/build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build/bmtk/utils/sonata/edge_stats.py:434: FutureWarning: Downcasting object dtype arrays on .fillna, .ffill, .bfill is deprecated and will change in a future version. Call result.infer_objects(copy=False) instead. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)`
edges_df['nsyns'] = 1 if 'nsyns' not in edges_df.columns else edges_df['nsyns'].fillna(1)
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
=========================== short test summary info ============================
FAILED bmtk/tests/simulator/bionet/test_morphology.py::test_base - TypeError:...
FAILED bmtk/tests/simulator/bionet/test_morphology.py::test_full - TypeError:...
FAILED bmtk/tests/simulator/bionet/test_morphology.py::test_multicell - TypeE...
FAILED bmtk/tests/simulator/bionet/test_morphology.py::test_find_sections - T...
FAILED bmtk/tests/simulator/bionet/test_morphology.py::test_move_and_rotate
FAILED bmtk/tests/simulator/bionet/test_morphology.py::test_move_and_rotate_cached
=========== 6 failed, 337 passed, 57 skipped, 29 warnings in 19.80s ============
E: pybuild pybuild:389: test: plugin distutils failed with: exit code=1: cd /build/reproducible-path/bmtk-1.1.1+ds/.pybuild/cpython3_3.13/build; python3.13 -m pytest
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.12 3.13" returned exit code 13
http://qa-logs.debian.net/2025/01/07/bmtk_1.1.1+ds-3_unstable.log
All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20250107;users=***@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20250107&fusertaguser=***@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.